Transcript 165759

Transcript

ID CARD

MetamORF ID

165759

ENSMUST00000176228

Name

Ctgf-203

Strand

Biotype

protein_coding

Start-end positions

24595726-24598683

CDS Start-stop positions

24595726-24597075

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:14219

Aliases

Ccn2,
Ctgf, ENSMUSG00000019997, fisp-12,
Fisp12, Hcs24, MGI:95537,
NCBI:14219, OFF:Ccn2

Chr 10

ORFs

54 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
599356	69	CTG ...	LGN ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
564012	144	GTG ...	VEF ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, v6-5
194201	54	CTG ...	LQT ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, C2C12, E14, MEF, v6-5
194527	48	CTG ...	LPR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
578677	225	GTG ...	VKT ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, R1E, v6-5
266993	30	CTG ...	LHQ ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Brain, E14, MEF, R1E, v6-5
418459	195	GTG ...	VCT ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative Downstream sORF	3T3, C2C12, E14, MEF, R1E, v6-5
563758	33	GTG ...	VQH ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
568849	51	CTG ...	LRF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
160684	60	CTG ...	LPL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
418531	288	AAG ...	KCI ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	C2C12
637723	99	CTG ...	LRF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
265060	135	GTG ...	VGW ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
76981	36	CTG ...	LCL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
560147	42	GTG ...	VTS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
217111	36	CTG ...	LYY ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Brain, E14, MEF, R1E, v6-5
220519	120	ATG ...	MSV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
255183	57	CTG ...	LRL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
272625	84	ATG ...	MPR ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, v6-5
592951	45	CTG ...	LRA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
418496	126	CTG ...	LHT ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative Downstream sORF	3T3, C2C12, E14, MEF, R1E, v6-5
611247	144	GTG ...	VHR ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, v6-5
77883	156	ATG ...	MGP ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
223123	66	TTG ...	LPG ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
165758	36	CTG ...	LCL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Brain, E14, MEF, v6-5
232387	36	CTG ...	LSS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Downstream sORF	3T3, E14, MEF, v6-5
584498	36	CTG ...	LWD ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E, v6-5
579200	72	ATG ...	MHL ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
553935	150	CTG ...	LPV ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, v6-5
85623	231	GTG ...	VSS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
74758	201	GTG ...	VSP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
629582	129	CTG ...	LLH ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, R1E, v6-5
170862	84	CTG ...	LQI ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
283886	105	ATG ...	MTI ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
587608	30	CTG ...	LPL ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, v6-5
1094297	75	CTG ...	LLW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
63757	240	GTG ...	VHP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
597850	153	CTG ...	LRG ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, E14, MEF, v6-5
237036	132	CTG ...	LQR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
1111721	39	CTG ...	LRQ ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
61134	222	GTG ...	VGR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
63802	243	ATG ...	MVH ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5
247920	114	GTG ...	VRS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
262860	57	TTG ...	LSP ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Downstream sORF	Brain, MEF, v6-5
182887	90	CTG ...	LPR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
232815	66	ATG ...	MTS ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Downstream sORF	Brain, C2C12, MEF, v6-5
1381185	51	CTG ...	LLP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
638030	123	CTG ...	LRP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
223907	75	CTG ...	LGT ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Downstream sORF	Brain, MEF, v6-5
418528	72	ATT ...	IWP ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
276241	39	CTG ...	LPG ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, C2C12, E14, MEF, v6-5
240155	96	GTG ...	VPA ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Downstream sORF	3T3, Brain, E14, MEF, v6-5
270044	75	CTG ...	LRP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
66652	102	CTG ...	LTA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, v6-5

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