Transcript 39912 | MetamORF

Transcript

ID CARD

MetamORF ID

39912

ENSMUST00000069597

Name

Csnk1g3-201

Strand

Biotype

protein_coding

Start-end positions

53862113-53955684

CDS Start-stop positions

53895777-53953299

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:70425

Aliases

3300002K07Rik,
C330049O21Rik, Csnk1g3, ENSMUSG00000073563,
MGI:1917675, NCBI:70425, OFF:Csnk1g3

Chr 18

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
394627	84	TTG ...	LLR ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, R1E, v6-5
486154	33	CTG ...	LLG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Spleen_B_cell
393517	48	GTG ...	VPL ...	Ribo-seq	GTG	weak	15	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
393434	60	ATG ...	MTP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
395401	69	CTG ...	LRS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, R1E, v6-5
959306	180	ATG ...	MRA ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	sORF Upstream	BMDC, E14, Glioma, Liver, MEF, MESC
395502	117	TTG ...	LIW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, MEF
40006	36	ATG ...	MLE ...	Ribo-seq	ATG	weak	14	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis
958115	216	ATT ...	IFF ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
393470	72	TTG ...	LKT ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, MEF, R1E, v6-5
958701	111	AGG ...	RMF ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
396023	81	CTG ...	LRR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, R1E, v6-5
1196852	78	ATA ...	IIL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
394202	48	ATG ...	MNR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
1196934	108	ATA ...	IIK ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
398179	57	GTG ...	VVG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
398345	33	TTG ...	LTD ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E
393057	39	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, v6-5
395207	156	GTG ...	VFT ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, Liver, R1E, Spleen_B_cell
393840	36	CTG ...	LYE ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, MEF, R1E, Spleen_B_cell, v6-5
716953	90	GTG ...	VQF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
396235	72	TTG ...	LLI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
959391	105	ATA ...	IKR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
396853	48	GTG ...	VMH ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E, v6-5
958634	42	AGG ...	RRH ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
801370	63	TTG ...	LDL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
399295	51	ATG ...	MWQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
39911	60	TTG ...	LPR ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, R1E, Spleen_B_cell, Testis
393615	108	ATG ...	MFD ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
958601	69	AAG ...	KTY ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
40716	69	ATG ...	MCS ...	Ribo-seq	ATG	weak	15	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, Testis
1631466	45	TTG ...	LGK ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
397555	33	ATG ...	MWQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF
392778	78	ATG ...	MIE ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC
393212	45	ATG ...	MHL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Brain, E14, Glioma, Liver, MEF, MESC, v6-5
398077	36	ATG ...	MHP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain

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