Transcript 52189 | MetamORF

Transcript

ID CARD

MetamORF ID

52189

ENSMUST00000198174

Name

Csde1-210

Strand

Biotype

nonsense_mediated_decay

Start-end positions

103043193-103057786

CDS Start-stop positions

-103044794

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:229663

Aliases

AA960392,
BC016898, Csde1, D3Jfr1,
ENSMUSG00000068823, MGI:92356, mKIAA0885,
NCBI:229663, OFF:Csde1, unr

Chr 3

ORFs

39 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
52864	165	GTG ...	VIA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Neutrophil, Testis
52478	135	CTG ...	LLE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, R1E, Testis
1171816	39	CTG ...	LSR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	NSC, v6-5
52225	72	TTG ...	LSK ...	Ribo-seq	TTG		7	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Testis
505589	33	ATG ...	MGT ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	NMD sORF	B_cell, E14, Liver, MEF, Neutrophil, R1E, v6-5
137530	39	ATG ...	MTH ...	Ribo-seq	ATG		9	sORFs_org_Mouse	NMD sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
53996	87	CTG ...	LGT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, Testis
1173135	69	TTG ...	LVQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	NMD sORF	v6-5
134051	57	GTG ...	VKA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, NSC
52559	72	GTG ...	VEF ...	Ribo-seq	GTG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, NSC, Testis
52188	81	TTG ...	LER ...	Ribo-seq	TTG		6	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, NSC, R1E, Testis
749907	66	GTG ...	VQK ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	NMD sORF	R1E, v6-5
52833	126	GTG ...	VRL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, NSC, Testis
751831	39	TTG ...	LQL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	NMD sORF	B_cell, Liver, MEF, NSC
53299	72	CTG ...	LDD ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, R1E, v6-5
816681	84	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	B_cell
506361	30	ATG ...	MWK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	NMD sORF	E14, Liver, MEF, NSC
133911	60	ATG ...	MLG ...	Ribo-seq	ATG		9	sORFs_org_Mouse	NMD sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
53520	132	CTG ...	LEG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, Neutrophil, R1E, Testis
52399	123	GTG ...	VDR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Neutrophil, Testis
53101	189	GTG ...	VIP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Neutrophil, Testis
129967	66	GTG ...	VTM ...	Ribo-seq	GTG		7	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
54105	60	GTG ...	VIL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Neutrophil, NSC, Testis
51933	99	TTG ...	LVN ...	Ribo-seq	TTG		8	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, v6-5
54208	141	GTG ...	VTL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, R1E, Testis
818868	42	CTG ...	LEM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	B_cell, MEF, Neutrophil
137515	96	CTG ...	LPK ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, R1E
140706	42	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	NMD sORF	B_cell, E14, Liver, MEF, NSC
1056943	102	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Neutrophil
1057361	96	CTG ...	LGD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Neutrophil
819861	87	TTG ...	LLV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	B_cell
53355	81	ATG ...	MLL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, R1E, Testis
54109	216	TTG ...	LPG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, NSC, Testis
820300	36	ATG ...	MTW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	B_cell, MEF
507111	75	CTG ...	LWG ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, NSC, v6-5
135592	42	GTG ...	VTN ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	NMD sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, v6-5
504005	48	TTG ...	LLF ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	NMD sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
138536	30	GTG ...	VTN ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	NMD sORF	B_cell, E14, Liver, MEF, Neutrophil, R1E, v6-5
54016	57	TTG ...	LNL ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	NMD sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5

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