Transcript 44156 | MetamORF

Transcript

ID CARD

MetamORF ID

44156

ENSMUST00000125488

Name

Cry2-203

Strand

Biotype

processed_transcript

Start-end positions

92425154-92434036

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:12953

Aliases

AV006279,
Cry2, D130054K12Rik, ENSMUSG00000068742,
MGI:1270859, NCBI:12953, OFF:Cry2

Chr 2

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
50655	225	CTG ...	LLA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
47505	102	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
1418915	201	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
46125	69	CTG ...	LFV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
49903	270	GTG ...	VHW ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, R1E, Testis
51607	213	GTG ...	VRG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
44579	120	CTG ...	LQS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
46354	111	CTG ...	LED ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
1419132	198	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
46358	90	GTG ...	VRG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
46874	81	CTG ...	LNS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
44155	147	GTG ...	VHW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
48319	102	CTG ...	LDT ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
49076	72	GTG ...	VRC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
51543	195	GTG ...	VRC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
48981	30	CTG ...	LMC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis

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