Transcript 422865

Transcript

ID CARD

MetamORF ID

422865

ENSMUST00000111432

Name

Creg1-202

Strand

Biotype

protein_coding

Start-end positions

165763746-165775308

CDS Start-stop positions

165763785-165773847

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:433375

Aliases

AA755314,
Creg, Creg1, ENSMUSG00000040713,
MGI:1344382, NCBI:433375, OFF:Creg1

Chr 1

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
339590	30	CTG ...	LGL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, NSC, Spleen_B_cell
23368	147	CTG ...	LPF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
971871	171	AAG ...	KNI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
387904	33	TTG ...	LIP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Neutrophil
32122	48	GTG ...	VTV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Neutrophil, Spleen_B_cell
940809	66	ACG ...	TWT ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
379017	33	CTG ...	LAL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
879167	171	CTG ...	LSS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
324486	162	CTG ...	LGR ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
892400	183	CTG ...	LPV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
932072	42	ACG ...	TSQ ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
103364	39	ATG ...	MDL ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Neutrophil, Spleen_B_cell
30203	150	TTG ...	LLP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
372935	39	ATG ...	MQG ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, Neutrophil, Spleen_B_cell
299439	36	CTG ...	LKN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Neutrophil
943617	45	ACG ...	TVL ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
395523	78	CTG ...	LGL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Neutrophil
359376	57	CTG ...	LST ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Neutrophil, Spleen_B_cell
884775	177	GTG ...	VLL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver

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