Transcript 1174 | MetamORF

Transcript

ID CARD

MetamORF ID

1174

ENSMUST00000134025

Name

Cpne3-203

Strand

Biotype

processed_transcript

Start-end positions

19540612-19543678

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAT ...

Genome browsers

UCSC

Gene

NCBI:70568

Aliases

5430428M23Rik,
5730450C07Rik, C85108, CPN3,
Cpne3, ENSMUSG00000028228, MGI:1917818,
NCBI:70568, OFF:Cpne3

Chr 4

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1379710	54	TTG ...	LFF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF
58833	33	CTG ...	LMV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Neutrophil, Testis
1173	30	ATG ...	MEI ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, MEF, Neutrophil, Skin_tumor
1058474	108	CTG ...	LNP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil
1059941	93	CTG ...	LFG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
163550	180	TTG ...	LEF ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E
161756	144	CTG ...	LMV ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E
1058847	69	TTG ...	LEF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
1060873	204	CTG ...	LFG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Liver, Neutrophil, R1E
1060001	66	CTG ...	LCY ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
147532	30	GTG ...	VLW ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, Spleen_B_cell, v6-5

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