Transcript 23358 | MetamORF

Transcript

ID CARD

MetamORF ID

23358

ENSMUST00000130027

Name

Cops3-204

Strand

Biotype

processed_transcript

Start-end positions

59826210-59839838

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:26572

Aliases

Cops3,
Csn3, ENSMUSG00000019373, MGI:1349409,
NCBI:26572, OFF:Cops3, Sgn3

Chr 11

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
23562	162	GTG ...	VKF ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
455097	219	GTG ...	VLG ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1337035	33	CTG ...	LFC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC
21212	51	GTG ...	VLL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
304001	45	TTG ...	LRR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
418965	108	ATC ...	INK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	C2C12
20414	66	CTG ...	LDT ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
19396	123	CTG ...	LCY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
19655	75	TTG ...	LSH ...	Ribo-seq	TTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
419835	270	ATC ...	INK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	C2C12
91593	57	GTG ...	VLG ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
313334	237	TTG ...	LSH ...	Ribo-seq	TTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
301896	75	GTG ...	VNS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, Spleen_B_cell
20293	177	GTG ...	VDM ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, v6-5
1125040	42	ATG ...	MQN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
311535	57	GTG ...	VEN ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF
23357	228	CTG ...	LDT ...	Ribo-seq	CTG		14	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
297943	33	TTG ...	LKE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF
295002	54	ATG ...	MEP ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	ncRNA sORF	v6-5

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