Transcript 14983 | MetamORF

Transcript

ID CARD

MetamORF ID

14983

ENSMUST00000110463

Name

Cops2-203

Strand

Biotype

protein_coding

Start-end positions

125830304-125859139

CDS Start-stop positions

125832193-125858989

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:12848

Aliases

AI315723,
C85265, Cops2, Csn2,
ENSMUSG00000027206, MGI:1330276, NCBI:12848,
OFF:Cops2, Sgn2, TRIP-15,
Trip15

Chr 2

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
107964	51	ATG ...	MES ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, Spleen_B_cell
16531	60	ATG ...	MLR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, Skin_tumor, Spleen_B_cell
124528	93	TTG ...	LII ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, v6-5
93294	66	CTG ...	LKT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
49415	42	ATG ...	MIS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
118833	111	ATG ...	MIS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
1161858	33	ATG ...	MSD ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
124000	48	TTG ...	LTH ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Spleen_B_cell
1168807	36	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
497146	60	TTG ...	LFK ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
729915	105	ATG ...	MLW ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
493612	78	ATG ...	MAE ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell, v6-5
1636985	66	CTG ...	LMW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
109090	39	ATG ...	MGI ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
497337	30	ATG ...	MTS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell
109836	66	CTG ...	LIF ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Spleen_B_cell, v6-5
1162431	33	GTG ...	VRR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
15265	45	ATG ...	MLR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC, Skin_tumor, Spleen_B_cell
123885	138	GTG ...	VQS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, v6-5
115866	45	GTG ...	VPI ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, Spleen_B_cell
125916	117	CTG ...	LKS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, v6-5
500701	51	ATG ...	MID ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell
733824	81	CTG ...	LHR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
14982	45	ATG ...	MDQ ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
1640138	63	ATG ...	MWR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
497727	48	TTG ...	LNW ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell, v6-5
497095	39	ATG ...	MMN ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
111747	96	GTG ...	VQS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
117728	126	CTG ...	LMW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, Spleen_B_cell, v6-5
1681181	36	TTG ...	LSG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
119943	123	ATG ...	MWR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
119765	123	CTG ...	LTW ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
116085	57	TTG ...	LKP ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Spleen_B_cell, v6-5
1165262	45	ATG ...	MSN ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
112333	51	CTG ...	LSP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
494523	36	ATG ...	MID ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC, Spleen_B_cell
496807	36	ATG ...	MNQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
109145	87	GTG ...	VNL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
1168060	39	TTG ...	LKV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
501677	72	ATG ...	MES ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC, Spleen_B_cell
107680	81	TTG ...	LKR ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
49535	54	CTG ...	LTW ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
98690	42	ATG ...	MWI ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
110555	69	TTG ...	LIK ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell, v6-5
99488	63	CTG ...	LIF ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5

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