Transcript 78762 | MetamORF

Transcript

ID CARD

MetamORF ID

78762

ENSMUST00000209735

Name

Col4a1-208

Strand

Biotype

nonsense_mediated_decay

Start-end positions

11198431-11312689

CDS Start-stop positions

11202977-11312599

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:12826

Aliases

Bru,
Col4a-1, Col4a1, ENSMUSG00000031502,
MGI:88454, NCBI:12826, OFF:Col4a1,
Raw, Svc

Chr 8

ORFs

52 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5446	144	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
5638	111	GTG ...	VTK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF
607652	54	CTG ...	LDH ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
1520339	30	GTG ...	VRF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	CDS NMD sORF	Brain, NSC
80277	33	CTG ...	LDF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
81139	102	GTG ...	VEC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, R1E
1262951	51	AAG ...	KVT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
5486	45	ATG ...	MLE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
610673	108	CTG ...	LQL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF
1108245	51	GTG ...	VKG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
1446025	105	TTG ...	LPG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
611261	75	GTG ...	VQL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
1445168	111	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
5335	75	ATG ...	MAL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
609806	75	CTG ...	LAV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
81083	129	CTG ...	LDM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
416613	153	AGG ...	RES ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
80078	108	TTG ...	LPG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, R1E
5094	162	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1105277	39	GTG ...	VAL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
609705	90	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1580881	33	CTG ...	LAV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1748742	63	CTG ...	LFC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
5122	69	GTG ...	VST ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1520272	54	ATG ...	MPA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	CDS NMD sORF	NSC
80522	132	GTG ...	VMA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Testis
1748657	60	TTG ...	LDF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
609962	126	CTG ...	LQH ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF
247123	99	TTG ...	LQG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, R1E
1263223	186	CTG ...	LHF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14
1519721	30	ATG ...	MLT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
78761	120	CTG ...	LEE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Downstream NMD sORF	Brain, Liver, MEF, NSC, Testis, v6-5
607170	81	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
1747132	42	ATG ...	MER ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
1107345	78	GTG ...	VCC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
1107129	42	GTG ...	VVA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
80421	165	CTG ...	LRK ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Liver, MEF, Testis, v6-5
5623	129	TTG ...	LTC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1747729	72	ATG ...	MAF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
5237	42	CTG ...	LEN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, R1E
80967	78	CTG ...	LST ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Liver, MEF, R1E, Testis
1108036	48	CTG ...	LRT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC, v6-5
1383650	123	GTG ...	VTG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
5407	48	GTG ...	VML ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, R1E
1106171	30	TTG ...	LWW ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
78929	207	GTG ...	VGF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E, Testis
236975	63	TTG ...	LKA ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, Liver, MEF, NSC, v6-5
1747967	39	CTG ...	LVK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
1104350	57	CTG ...	LDR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
1106186	60	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
607967	93	GTG ...	VPR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, v6-5
5595	69	TTG ...	LWS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain

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