Transcript 81084 | MetamORF

Transcript

ID CARD

MetamORF ID

81084

ENSMUST00000209661

Name

Col4a1-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

11218035-11241148

CDS Start-stop positions

11219110-

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:12826

Aliases

Bru,
Col4a-1, Col4a1, ENSMUSG00000031502,
MGI:88454, NCBI:12826, OFF:Col4a1,
Raw, Svc

Chr 8

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
81083	129	CTG ...	LDM ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	Brain, E14, Liver, Testis
5623	129	TTG ...	LTC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	E14, v6-5
5510	78	CTG ...	LAC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	E14
1579419	36	GTG ...	VKL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
607890	69	CTG ...	LDN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
5595	69	TTG ...	LWS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	E14
81139	102	GTG ...	VEC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, Testis
5094	162	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
603386	135	TTG ...	LGI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
607559	114	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
5446	144	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1104256	39	TTG ...	LTG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
608057	108	TTG ...	LGF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
605951	60	GTG ...	VTQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3
612132	105	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, E14
1578433	30	CTG ...	LDF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
607750	54	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
609299	102	GTG ...	VSW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	3T3, E14
5122	69	GTG ...	VST ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	E14, MEF
602978	45	CTG ...	LEF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, Brain
607652	54	CTG ...	LDH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	E14
1326173	111	TTG ...	LFL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	E14

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