Transcript 2688 | MetamORF

Transcript

ID CARD

MetamORF ID

2688

ENSMUST00000141483

Name

Col1a2-205

Strand

Biotype

protein_coding

Start-end positions

4504814-4516419

CDS Start-stop positions

4505840-

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:12843

Aliases

AA960264,
AI325291, Col1a-2, Col1a2,
Cola-2, Cola2, ENSMUSG00000029661,
MGI:88468, NCBI:12843, OFF:Col1a2,
oim

Chr 6

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
68771	153	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	C2C12
208235	102	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Brain, MEF
1739649	36	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
2894	51	CTG ...	LEN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	MEF, Skin_tumor, v6-5
584209	144	GTG ...	VLM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
1091801	33	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	v6-5
587566	147	ATG ...	MVL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	MEF
1739371	42	GTG ...	VVQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
206636	111	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
415294	45	CTG ...	LET ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	C2C12, MEF
3296	51	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	MEF, Skin_tumor
3404	57	TTG ...	LLL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF	Brain, MEF, Skin_tumor
2687	39	CTG ...	LTK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Brain, MEF, Skin_tumor
3043	33	CTG ...	LGR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	MEF, Skin_tumor, v6-5
1742241	111	ATG ...	MCM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
415222	177	AGG ...	RER ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	C2C12
1740943	54	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
3567	54	CTG ...	LLS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	MEF, Skin_tumor
586293	201	CTG ...	LET ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	MEF
3068	54	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Brain, MEF, Skin_tumor
415330	198	AGG ...	RRF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	C2C12
1742455	105	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
3373	42	CTG ...	LTK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Brain, MEF, Skin_tumor
193211	36	TTG ...	LWI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Brain

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