Transcript 352331

Transcript

ID CARD

MetamORF ID

352331

ENSMUST00000034868

Name

Clk1-201

Strand

Biotype

protein_coding

Start-end positions

58412000-58424066

CDS Start-stop positions

58412197-58421934

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:12747

Aliases

Clk1,
ENSMUSG00000026034, MGI:107403, NCBI:12747,
OFF:Clk1, STY

Chr 1

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
476381	156	ATG ...	MKE ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
495055	75	TTG ...	LQT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, MEF, Spleen_B_cell
741333	99	GTG ...	VLG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, MEF
352330	45	ATG ...	MEK ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
483159	33	TTG ...	LQA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative sORF Upstream	Liver, MEF, Spleen_B_cell
741577	96	TTG ...	LGD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, MEF
472407	165	CTG ...	LTG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
489031	132	ATG ...	MEH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Spleen_B_cell
494708	150	ATG ...	MKE ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Spleen_B_cell
416007	180	ATT ...	IQR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
1728283	36	CTG ...	LSE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
479463	75	TTG ...	LQT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Spleen_B_cell
454004	138	ATG ...	MEH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
490141	33	TTG ...	LQA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Neutrophil, Spleen_B_cell
455584	96	TTG ...	LGD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Spleen_B_cell
499152	159	CTG ...	LTG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Spleen_B_cell
719708	99	GTG ...	VLG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
501523	72	GTG ...	VSK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell

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