Transcript 654656

Transcript

ID CARD

MetamORF ID

654656

ENSMUST00000109260

Name

Clint1-201

Strand

Biotype

protein_coding

Start-end positions

45852051-45910625

CDS Start-stop positions

45852152-45909287

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:216705

Aliases

AI642036,
AW537616, C530049I24Rik, Clint1,
ENSMUSG00000006169, Enth, Epn4,
F630206G17Rik, MGI:2144243, NCBI:216705,
OFF:Clint1

Chr 11

ORFs

52 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
652716	63	CTG ...	LCN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, BMDC
1286954	57	AAG ...	KQE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
644151	78	ATG ...	MDR ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, Glioma, Liver, MEF, MESC
312366	96	ATG ...	MSG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
651534	60	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
452393	108	GTG ...	VPS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
770507	54	GTG ...	VES ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
18612	69	ATG ...	MRK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
648130	48	CTG ...	LSG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
299543	63	TTG ...	LLQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
451270	45	TTG ...	LAQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
933379	180	TTG ...	LHR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
454453	84	ATG ...	MIP ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, R1E, v6-5
306413	30	TTG ...	LVC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
933297	192	AGG ...	RPQ ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
641755	63	TTG ...	LGD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
932233	69	ATT ...	IYL ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1295402	135	ACG ...	TTP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1295893	99	AGG ...	RTL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
296738	87	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
447319	117	GTG ...	VTG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
452904	90	CTG ...	LDQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
648290	69	CTG ...	LEL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, BMDC
658764	105	TTG ...	LVC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
1294522	108	AAG ...	KTG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
650922	69	GTG ...	VVS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
448248	51	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
652763	57	ATG ...	MIP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC
447743	54	TTG ...	LLT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
450663	126	GTG ...	VTL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
644399	36	CTG ...	LLH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
311494	36	ATG ...	MIC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
453660	60	ATG ...	MMI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
320040	87	ATG ...	MMI ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, Neutrophil, R1E, v6-5
1287003	60	ACG ...	TKS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
650410	54	GTG ...	VPE ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E
770528	186	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
659893	66	CTG ...	LGS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Neutrophil, R1E
932475	132	ATC ...	ILE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
316105	114	TTG ...	LSL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF, Neutrophil, R1E, v6-5
20984	72	GTG ...	VMR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
930772	207	ATA ...	IST ...	Ribo-seq	ATA		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
935455	99	ATT ...	ITQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
445589	81	CTG ...	LSP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
448428	33	TTG ...	LIL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
933035	96	AAG ...	KPH ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
645875	45	ATG ...	MPL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	B_cell, BMDC, Glioma, Liver, MEF, MESC
644972	66	GTG ...	VSS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
660183	57	CTG ...	LGT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14
935000	84	ATC ...	ILS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
936725	126	ATT ...	ITQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
648665	72	CTG ...	LVV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell

Export data