Transcript 128932

Transcript

ID CARD

MetamORF ID

128932

ENSMUST00000106613

Name

Clcc1-203

Strand

Biotype

protein_coding

Start-end positions

108653990-108678012

CDS Start-stop positions

108654343-108676936

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

NCBI:229725

Aliases

Clcc1,
ENSMUSG00000027884, Mclc, MGI:2385186,
NCBI:229725, OFF:Clcc1

Chr 3

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
141839	87	CTG ...	LKC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
133149	174	CTG ...	LTE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
865262	39	CTG ...	LAK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
538093	72	CTG ...	LPR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
866287	63	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
864697	57	CTG ...	LAK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
138091	72	CTG ...	LKC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
128931	180	GTG ...	VVL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
816900	93	GTG ...	VDL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
138602	33	ATG ...	MSV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
539933	117	CTG ...	LVN ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
134396	69	ATG ...	MLM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
535562	114	GTG ...	VNS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
139530	54	CTG ...	LLW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
539546	123	TTG ...	LRL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
539327	45	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
816842	36	ATG ...	MTK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
140695	54	TTG ...	LTY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain

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