Transcript 492897

Transcript

ID CARD

MetamORF ID

492897

ENSMUST00000139433

Name

Ckap5-208

Strand

Biotype

retained_intron

Start-end positions

91546320-91565168

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:75786

Aliases

3110043H24Rik,
4930432B04Rik, Ckap5, D730027C18Rik,
ENSMUSG00000040549, MGI:1923036, mKIAA0097,
NCBI:75786, OFF:Ckap5, T25636

Chr 2

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1166793	66	ATG ...	MSY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	R1E
1053247	201	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
96073	45	CTG ...	LLG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
47673	39	GTG ...	VAC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1876897	33	ATG ...	MKR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
46804	48	TTG ...	LKL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, R1E
102282	42	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
496292	69	GTG ...	VVQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
499633	60	TTG ...	LKG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Spleen_B_cell
492896	75	CTG ...	LKG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
497755	66	CTG ...	LDN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
49375	141	CTG ...	LGI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
1052650	93	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1638334	36	TTG ...	LKK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1053889	156	TTG ...	LKE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1054920	126	CTG ...	LPT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1642976	42	TTG ...	LRL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1053118	96	GTG ...	VPT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
46378	162	TTG ...	LKI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
1052818	198	TTG ...	LPK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
115478	51	TTG ...	LNL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1054792	84	TTG ...	LEK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1054926	69	CTG ...	LDA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1053259	90	CTG ...	LGT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E

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