Transcript 891 | MetamORF

Transcript

ID CARD

MetamORF ID

891

ENSMUST00000030128

Name

Chmp5-201

Strand

Biotype

protein_coding

Start-end positions

40948407-40965303

CDS Start-stop positions

40948608-40964645

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:76959

Aliases

2210412K09Rik,
AW545668, Chmp5, ENSMUSG00000028419,
MGI:1924209, NCBI:76959, OFF:Chmp5

Chr 4

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
163606	105	GTG ...	VFP ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, Liver, MEF, NSC, R1E, v6-5
165001	159	ATG ...	MKI ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
890	36	TTG ...	LTK ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Skin_tumor, Spleen_B_cell, v6-5
152638	63	ATG ...	MRQ ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, NSC, Spleen_B_cell
822270	195	CTG ...	LKT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
513914	147	CTG ...	LRM ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Spleen_B_cell
160401	84	ATG ...	MKI ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
156910	141	ATG ...	MGW ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
158002	72	TTG ...	LGF ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
149932	87	CTG ...	LMK ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
165795	138	ATG ...	MRQ ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
163461	162	CTG ...	LMK ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E
510753	75	ATG ...	MSN ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
153923	30	GTG ...	VFP ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
60701	66	TTG ...	LGR ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
514147	153	CTG ...	LRL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Spleen_B_cell
160314	90	CTG ...	LVF ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
1082108	63	ATG ...	MNL ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF, NSC, R1E, v6-5
163237	120	CTG ...	LQF ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, Liver, MEF, NSC, R1E, v6-5
896587	33	AAG ...	KRN ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
897783	78	ATA ...	IAP ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
158494	54	ATG ...	MQM ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC
899261	102	ACG ...	TLP ...	Ribo-seq	ACG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
414161	39	ATT ...	ILR ...	Ribo-seq	ATT	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14
1178343	57	TTG ...	LDC ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, R1E, v6-5
544582	48	ATG ...	MRS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC
159466	111	ATG ...	MRW ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
148156	99	ATG ...	MSF ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
166365	186	ATG ...	MRW ...	Ribo-seq	ATG		12	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
153712	45	CTG ...	LQF ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, NSC, Spleen_B_cell
166250	174	ATG ...	MSF ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
900491	153	ATA ...	IAP ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, E14
1178549	78	ATG ...	MAC ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF, v6-5
896952	54	ATA ...	IAG ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14

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