Transcript 41338 | MetamORF

Transcript

ID CARD

MetamORF ID

41338

ENSMUST00000128694

Name

Chka-209

Strand

Biotype

nonsense_mediated_decay

Start-end positions

3851773-3894365

CDS Start-stop positions

3852076-3871047

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:12660

Aliases

Chetk-alpha,
Chk, Chka, ChoK,
CK, CK/EK-alpha, EK,
ENSMUSG00000024843, EtnK-alpha, MGI:107760,
NCBI:12660, OFF:Chka

Chr 19

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
42448	30	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	R1E, Testis, v6-5
42615	132	CTG ...	LFQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
42550	123	CTG ...	LWC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Testis
1158084	87	GTG ...	VNG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
403430	75	TTG ...	LQR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	R1E
1157209	102	TTG ...	LEI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
42133	105	CTG ...	LNQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	R1E, Testis, v6-5
42306	198	CTG ...	LPL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
42446	192	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
42597	81	TTG ...	LLE ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, R1E, Testis, v6-5
724623	48	GTG ...	VVS ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF
721987	51	TTG ...	LAM ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC
43042	78	TTG ...	LEG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, R1E, Testis, v6-5
42022	54	CTG ...	LHK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	R1E, Testis, v6-5
722270	45	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1157834	63	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
41415	117	CTG ...	LPD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
1159287	108	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1159705	75	ATG ...	MII ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
41708	222	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Testis
42405	264	CTG ...	LES ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
41467	129	TTG ...	LDT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E, Testis
41976	105	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Testis
1633649	66	GTG ...	VYS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1158965	129	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
42746	45	TTG ...	LAS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	Testis
1158527	75	TTG ...	LQI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
41337	90	TTG ...	LTT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Testis, v6-5
404732	60	TTG ...	LGQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	R1E
1007770	45	CTG ...	LML ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, R1E, v6-5

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