Transcript 52416 | MetamORF

Transcript

ID CARD

MetamORF ID

52416

ENSMUST00000134702

Name

Cers2-204

Strand

Biotype

retained_intron

Start-end positions

95320133-95322672

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:76893

Aliases

0610013I17Rik,
AI225939, Cers2, ENSMUSG00000015714,
Lass2, MGI:1924143, NCBI:76893,
OFF:Cers2, TRH3

Chr 3

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
52805	48	TTG ...	LEH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
54144	120	GTG ...	VAT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
506396	51	CTG ...	LVC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1221603	138	ATA ...	IED ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
52415	57	CTG ...	LLF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
864956	150	GTG ...	VII ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
53733	39	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
133903	39	TTG ...	LPL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
538966	60	TTG ...	LCS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, v6-5
1057642	195	GTG ...	VAT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1218376	204	ATC ...	ILH ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
139951	114	CTG ...	LPR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Liver, MEF
54252	54	GTG ...	VFA ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
52728	177	CTG ...	LEL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, Neutrophil, Testis
504852	60	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
52670	108	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
51844	96	CTG ...	LNV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
747877	30	CTG ...	LVP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, NSC
54597	45	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
983071	54	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
1218781	81	ATT ...	IEL ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Intronic sORF	E14
53856	123	GTG ...	VLQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
53868	72	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
131259	33	TTG ...	LLL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, v6-5
138311	30	TTG ...	LLA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1219527	108	ATC ...	IPS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14

Export data