Transcript 92067 | MetamORF

Transcript

ID CARD

MetamORF ID

92067

ENSMUST00000194458

Name

Cd34-204

Strand

Biotype

retained_intron

Start-end positions

194938905-194950761

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:12490

Aliases

AU040960,
Cd34, ENSMUSG00000016494, MGI:88329,
NCBI:12490, OFF:Cd34

Chr 1

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
92066	48	CTG ...	LAY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
372379	54	CTG ...	LLR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
121186	36	CTG ...	LII ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
299758	108	CTG ...	LGS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
337834	111	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
309142	57	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
381490	51	TTG ...	LRK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
301431	54	CTG ...	LPW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
367106	186	TTG ...	LVY ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
385480	36	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
290039	51	TTG ...	LIY ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
298541	159	CTG ...	LPS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
405679	165	TTG ...	LTS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
406431	60	ATG ...	MSL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
323141	165	ATG ...	MHI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain

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