Transcript 191899

Transcript

ID CARD

MetamORF ID

191899

ENSMUST00000000058

Name

Cav2-201

Strand

Biotype

protein_coding

Start-end positions

17281185-17289115

CDS Start-stop positions

17281361-17287047

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:12390

Aliases

AI447843,
Cav2, ENSMUSG00000000058, MGI:107571,
NCBI:12390, OFF:Cav2

Chr 6

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
206777	201	CTG ...	LPR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, MEF, NSC
586273	108	ATG ...	MTP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
209699	171	TTG ...	LQR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, MEF, NSC
910730	186	ACG ...	TTE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
191898	201	CTG ...	LPR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, MEF, NSC
209158	207	CTG ...	LDP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF, NSC
199153	57	TTG ...	LAH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
908750	186	ACG ...	TTE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
578827	30	ATG ...	MLS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
910858	195	AGG ...	RDR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
199580	108	ATG ...	MTP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
195290	39	GTG ...	VWA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
195132	63	TTG ...	LSL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
201689	171	TTG ...	LQR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF, NSC
910311	300	ATA ...	ICD ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
195172	129	ATG ...	MCS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
908491	195	AGG ...	RDR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
1666772	33	CTG ...	LAV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
207410	219	CTG ...	LSA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF, NSC
1669435	48	ATG ...	MTG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Downstream sORF	MEF
584708	129	ATG ...	MCS ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
1788870	36	CTG ...	LSA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF

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