Transcript 973656

Transcript

ID CARD

MetamORF ID

973656

ENSMUST00000195834

Name

Car3-203

Strand

Biotype

retained_intron

Start-end positions

14869178-14872069

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:12350

Aliases

BB219044,
Ca3, Car-3, Car3,
ENSMUSG00000027559, MGI:88270, NCBI:12350,
OFF:Car3

Chr 3

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
865348	30	TTG ...	LCG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver
1425088	72	GTG ...	VPL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
983436	171	CTG ...	LFP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver
865577	30	ATG ...	MPW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
983207	150	GTG ...	VSS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver
983442	129	CTG ...	LRG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
864906	93	CTG ...	LLA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver
866019	33	TTG ...	LMP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1425216	63	GTG ...	VGN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
864797	63	TTG ...	LAP ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	Liver
983400	99	GTG ...	VWL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1424219	66	CTG ...	LVG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
983311	72	GTG ...	VVS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver
866462	66	ATG ...	MSP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	Liver
866266	174	TTG ...	LPG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Liver
865079	114	TTG ...	LTH ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Liver
983080	57	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver
865222	189	ATG ...	MPV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Liver
973655	132	AGG ...	RPL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
866239	162	TTG ...	LDL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Liver
983234	153	TTG ...	LVS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Liver
983037	111	CTG ...	LRS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver

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