Transcript 8002 | MetamORF

Transcript

ID CARD

MetamORF ID

8002

ENSMUST00000179865

Name

Canx-205

Strand

Biotype

protein_coding

Start-end positions

50293961-50325673

CDS Start-stop positions

50296282-50311777

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:12330

Aliases

1110069N15Rik,
AI988026, Canx, Cnx,
D11Ertd153e, ENSMUSG00000020368, MGI:88261,
NCBI:12330, OFF:Canx

Chr 11

ORFs

115 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
292042	30	CTG ...	LGV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell, v6-5
9417	120	CTG ...	LMQ ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
19760	42	TTG ...	LTT ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Spleen_B_cell, v6-5
21974	42	TTG ...	LIL ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
9209	30	CTG ...	LLM ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Skin_tumor, Spleen_B_cell, v6-5
21833	36	TTG ...	LKM ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell, v6-5
454624	111	GTG ...	VRV ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver, MEF, Spleen_B_cell, v6-5
446647	72	GTG ...	VTV ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Spleen_B_cell, v6-5
9428	48	ATG ...	MTL ...	Ribo-seq	ATG		11	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
307229	36	ATG ...	MGG ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell
23622	123	ATG ...	MKR ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
1286679	57	ATC ...	IPR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
23350	171	GTG ...	VKI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	CDS sORF	Spleen_B_cell
1288431	36	ATT ...	ISL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
21613	69	GTG ...	VML ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
455147	30	TTG ...	LPN ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Spleen_B_cell, v6-5
419308	51	AGG ...	REV ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1295909	141	AAG ...	KRR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
23607	81	CTG ...	LSS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
17632	63	ATG ...	MDM ...	Ribo-seq	ATG	strong	11	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
1285328	93	AGG ...	RTT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1293759	147	ACG ...	TTN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
991518	87	ATG ...	MWW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
293990	30	GTG ...	VLL ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Spleen_B_cell
1339621	42	ATG ...	MKR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
18716	66	ATG ...	MLK ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
23626	69	ATG ...	MTG ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
319724	72	TTG ...	LTT ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell
449094	36	TTG ...	LTT ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Spleen_B_cell, v6-5
1294192	123	ACG ...	TGP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
9115	93	ATG ...	MRI ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
1292901	144	GTG ...	VGE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
9111	87	CTG ...	LSI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
645804	30	ATG ...	MIG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
448477	78	ATG ...	MKK ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
19635	99	GTG ...	VER ...	Ribo-seq	GTG	strong	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
419156	48	ACG ...	TRL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
8265	60	GTG ...	VKL ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
937059	69	ATA ...	ISP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
22257	75	CTG ...	LKK ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
1295495	33	AAG ...	KLL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
451676	33	ATG ...	MKR ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell
90871	78	CTG ...	LLR ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
18210	45	GTG ...	VYM ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
18143	57	ATG ...	MMM ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
1289666	60	ATC ...	IQM ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
302983	33	TTG ...	LMI ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
9555	138	CTG ...	LSI ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
9405	117	ATG ...	MQR ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
19710	75	TTG ...	LRL ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
90717	45	CTG ...	LAV ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
18903	63	CTG ...	LKK ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
1294916	117	AGG ...	RKK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
932537	39	ATA ...	ILK ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
8001	54	TTG ...	LKT ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
24036	57	CTG ...	LAV ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
419371	42	AAG ...	KTG ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1284665	81	ACG ...	TEN ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1288075	39	AGG ...	RKQ ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
937603	54	AGG ...	RES ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
90962	90	ATG ...	MAL ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
18912	51	ATG ...	MTR ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
292965	45	ATG ...	MLW ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
23181	45	ATG ...	MRK ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
1291712	69	AGG ...	RLL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
937353	69	AAG ...	KMV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
934496	126	ATA ...	ILL ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
309656	39	CTG ...	LET ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Spleen_B_cell
1288750	78	ATT ...	ISS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
22985	66	ATG ...	MVL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
932118	36	AAG ...	KKN ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
297855	30	CTG ...	LVH ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, Spleen_B_cell, v6-5
8565	57	TTG ...	LPT ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Skin_tumor, Spleen_B_cell, v6-5
456642	36	TTG ...	LFS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, Spleen_B_cell, v6-5
298463	81	CTG ...	LRH ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	E14, Liver, MEF, Spleen_B_cell, v6-5
938162	51	ATA ...	IPS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
22880	63	GTG ...	VLL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
8549	36	GTG ...	VFA ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Skin_tumor, Spleen_B_cell, v6-5
90653	90	TTG ...	LEL ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
18219	114	TTG ...	LVQ ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
23742	42	CTG ...	LMM ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, NSC, Spleen_B_cell, v6-5
22157	84	CTG ...	LQL ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
299206	30	CTG ...	LTR ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
22110	54	ATG ...	MMT ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
23567	159	ATG ...	MKK ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
21148	30	ATG ...	MIL ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
1287541	150	ATC ...	INS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
298136	66	GTG ...	VWR ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
22784	84	ATG ...	MLS ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
454032	39	CTG ...	LKS ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
22661	36	ATG ...	MKL ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, MEF, NSC, Spleen_B_cell, v6-5
22690	78	ATG ...	MLK ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
1287475	150	GTG ...	VRV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
18324	60	ATG ...	MKT ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
418844	105	ATA ...	ISV ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
316367	54	TTG ...	LIP ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
21044	33	ATG ...	MRK ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
451323	39	CTG ...	LQH ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
930937	162	ACG ...	TGP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1294378	132	ATA ...	IFQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
19222	45	GTG ...	VVT ...	Ribo-seq	GTG	strong	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
91407	39	ATG ...	MKK ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
17672	66	ATG ...	MMD ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
21460	51	GTG ...	VLL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
1294723	99	ATT ...	IGM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
450665	30	CTG ...	LKI ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
22525	81	GTG ...	VML ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
445679	30	GTG ...	VWC ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Spleen_B_cell, v6-5
23761	39	ATG ...	MMK ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
453131	48	CTG ...	LSP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Spleen_B_cell, v6-5
19080	42	GTG ...	VSQ ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
23789	108	ATG ...	MYF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
18111	54	ATG ...	MVL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
20459	84	TTG ...	LGG ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
22071	54	CTG ...	LPL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Spleen_B_cell, v6-5

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