Transcript 322509

Transcript

ID CARD

MetamORF ID

322509

ENSMUST00000153524

Name

Calm1-204

Strand

Biotype

retained_intron

Start-end positions

100199529-100203937

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:12313

Aliases

AI256814,
AI327027, AI461935, AL024000,
Calm, Calm1, CaM,
Cam1, ENSMUSG00000001175, MGI:88251,
NCBI:12313, OFF:Calm1

Chr 12

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
939093	30	ATT ...	IQG ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
25630	57	GTG ...	VVP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Spleen_B_cell
24884	54	GTG ...	VLG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell
1298301	84	ACG ...	TAP ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
25121	54	GTG ...	VQP ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell
1297854	96	ATA ...	IKM ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
459021	105	CTG ...	LGT ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Spleen_B_cell
420261	93	AAG ...	KMV ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
24632	108	CTG ...	LRW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
419932	66	AGG ...	RNW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
997103	84	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
9734	90	ATG ...	MVT ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Spleen_B_cell
25929	57	CTG ...	LVQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, MEF, Spleen_B_cell
419936	114	AAG ...	KLS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
25101	54	GTG ...	VPL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Spleen_B_cell
25307	57	GTG ...	VVL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell
24425	51	CTG ...	LGV ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Spleen_B_cell
25701	63	GTG ...	VSV ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Spleen_B_cell
1299123	120	ATC ...	ITT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
9763	87	GTG ...	VTA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Spleen_B_cell
938844	162	AAG ...	KEA ...	Ribo-seq	AAG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF
25511	84	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF

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