Transcript 186124

Transcript

ID CARD

MetamORF ID

186124

ENSMUST00000202391

Name

Cad-210

Strand

Biotype

processed_transcript

Start-end positions

31070356-31072194

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:69719

Aliases

2410008J01Rik,
AU018859, Cad, Cpad,
ENSMUSG00000013629, MGI:1916969, NCBI:69719,
OFF:Cad

Chr 5

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
188785	69	CTG ...	LGY ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Neutrophil, R1E
1737477	93	CTG ...	LWT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
188003	132	CTG ...	LTI ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell
1237903	147	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
189055	99	CTG ...	LLP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Neutrophil, R1E, Spleen_B_cell
189039	45	CTG ...	LGT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, Neutrophil
1235461	138	CTG ...	LGY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1242647	156	AAG ...	KIP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1666042	135	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
524626	219	GTG ...	VAG ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1237701	156	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
190240	135	CTG ...	LLT ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell
190611	87	GTG ...	VRL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Neutrophil, R1E, Spleen_B_cell
1241910	144	AAG ...	KNI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1666576	150	GTG ...	VSC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1666046	69	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1665702	99	ATG ...	MPA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
189218	81	TTG ...	LLE ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Neutrophil, R1E
1241578	126	ATT ...	IGS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
186123	78	CTG ...	LES ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Neutrophil, R1E

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