Transcript 32344 | MetamORF

Transcript

ID CARD

MetamORF ID

32344

ENSMUST00000147093

Name

C1qtnf6-203

Strand

Biotype

processed_transcript

Start-end positions

78523346-78529625

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

NCBI:72709

Aliases

2810036M19Rik,
Adiq, C1qtnf6, CTRP6,
ENSMUSG00000022440, MGI:1919959, NCBI:72709,
OFF:C1qtnf6

Chr 15

ORFs

49 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
682823	132	CTG ...	LPL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
684334	66	CTG ...	LQQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
32343	192	GTG ...	VVI ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
686439	66	TTG ...	LEN ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
32620	210	GTG ...	VHN ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
684178	279	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
683290	108	CTG ...	LGS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
687023	126	TTG ...	LTW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
686245	93	TTG ...	LGS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
688182	114	CTG ...	LAA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
686421	138	GTG ...	VML ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
355871	42	ATG ...	MGQ ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, MEF
683002	57	CTG ...	LAC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
685916	135	ATG ...	MAT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
684871	105	TTG ...	LWL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
685014	132	GTG ...	VTR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
683356	123	GTG ...	VPG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
683887	99	TTG ...	LCL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
684193	156	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
685734	78	CTG ...	LMI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
687423	36	CTG ...	LKS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
682683	39	ATG ...	MTW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
688049	183	CTG ...	LYA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
682234	96	GTG ...	VTV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
684888	72	CTG ...	LWA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
683348	48	GTG ...	VGA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
681780	288	GTG ...	VAP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
687279	141	GTG ...	VSK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
682176	57	CTG ...	LWP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
683939	57	CTG ...	LFP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
688121	219	GTG ...	VHI ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
682292	108	GTG ...	VWV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
683208	126	CTG ...	LVP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
681869	45	ATG ...	MSC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
686001	42	CTG ...	LEL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
685489	108	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
686416	42	GTG ...	VMT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
682735	117	GTG ...	VPD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
685256	234	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
686515	102	GTG ...	VRL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
687330	90	GTG ...	VCG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
688377	153	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
685526	171	ATG ...	MVP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
365239	54	CTG ...	LPE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
358592	54	GTG ...	VDT ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
686896	75	ATG ...	MIR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
686583	189	GTG ...	VIL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
365612	102	CTG ...	LMS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
686498	264	GTG ...	VGP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3

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