Transcript 946651

Transcript

ID CARD

MetamORF ID

946651

ENSMUST00000188898

Name

Bzw1-204

Strand

Biotype

protein_coding

Start-end positions

58393124-58403004

CDS Start-stop positions

58394212-

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:66882

Aliases

1200015E15Rik,
Bzw1, ENSMUSG00000051223, MGI:1914132,
mKIAA0005, NCBI:66882, OFF:Bzw1

Chr 1

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1180124	39	AGG ...	RSR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
8908	48	ATG ...	MQL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	sORF	BMDC, Brain, E14
46760	72	TTG ...	LGH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
13900	39	CTG ...	LRV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	BMDC, Brain, E14
1545407	60	CTG ...	LCV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
53645	93	ATG ...	MSV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, E14
311457	33	ATG ...	MSV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	Brain
12633	63	ATG ...	MKK ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	BMDC, Brain
10764	42	TTG ...	LLR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	Brain
948799	57	AAG ...	KTS ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	sORF	BMDC, E14
33677	93	ATG ...	MSV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, E14
50753	72	TTG ...	LGH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain

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