Transcript 36024 | MetamORF

Transcript

ID CARD

MetamORF ID

36024

ENSMUST00000151986

Name

Brd2-206

Strand

Biotype

protein_coding

Start-end positions

34114085-34121988

CDS Start-stop positions

-34118631

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:14312

Aliases

AW228947,
Brd2, D17H6S113E, ENSMUSG00000024335,
Frg-1, Fsrg-1, Fsrg1,
MGI:99495, mKIAA4005, Nat,
NCBI:14312, OFF:Brd2, Ring3,
Rnf3

Chr 17

ORFs

62 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
36934	156	TTG ...	LRG ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	sORF	B_cell, BMDC, Spleen_B_cell, Testis
36574	285	TTG ...	LTT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell, Testis
411130	126	ATT ...	IAP ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	sORF	C2C12
708494	135	TTG ...	LSQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	B_cell
381927	84	ATG ...	MYG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
703690	144	CTG ...	LGV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	B_cell
954985	279	ACG ...	TVS ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	sORF	BMDC
956787	129	AGG ...	RIA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	BMDC
482477	159	CTG ...	LPG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
38566	60	TTG ...	LEM ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell, Testis
382949	75	CTG ...	LRH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
381736	90	CTG ...	LLM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	B_cell
798007	243	CTG ...	LRA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	B_cell, BMDC
479809	138	CTG ...	LEG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
956119	33	CTG ...	LGC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	BMDC
955570	72	ACG ...	TSI ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	sORF	BMDC
38431	51	CTG ...	LGP ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell, Testis
700953	90	ATG ...	MCL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	BMDC
707699	87	TTG ...	LKT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	B_cell
381389	96	GTG ...	VPF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
704237	57	CTG ...	LTR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	B_cell
383851	87	CTG ...	LMY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
387413	93	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	B_cell
482228	30	TTG ...	LWL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
379241	198	TTG ...	LQA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
388211	201	GTG ...	VLQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
704021	72	ATG ...	MPR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	BMDC
954744	51	ACG ...	TQL ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	sORF	BMDC
36895	231	GTG ...	VAR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell, Testis
36683	192	CTG ...	LSP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF	B_cell, BMDC, Spleen_B_cell, Testis
36369	276	GTG ...	VSS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell, Testis
479535	138	GTG ...	VQS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF	B_cell, BMDC, Spleen_B_cell
382757	105	ATG ...	MHR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	B_cell
482736	147	CTG ...	LRS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
797742	288	TTG ...	LRL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	B_cell
38196	195	CTG ...	LLS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell, Testis
386189	297	CTG ...	LQM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
797805	120	GTG ...	VSV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	B_cell, BMDC
388512	117	TTG ...	LAR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
480022	150	TTG ...	LQT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
481917	33	ATG ...	MLW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
954499	33	AGG ...	RIS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	BMDC
37410	243	CTG ...	LRS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	sORF	B_cell, BMDC, MEF, Spleen_B_cell, Testis
956663	66	ATC ...	IRL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	sORF	BMDC
36261	54	ATG ...	MLG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell, Testis
706057	45	CTG ...	LSG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	B_cell
380357	117	GTG ...	VTT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	B_cell, BMDC, Spleen_B_cell
798868	279	CTG ...	LTQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	B_cell, BMDC
481855	198	CTG ...	LWL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	B_cell, BMDC, Spleen_B_cell
955304	102	CTG ...	LST ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	BMDC
955228	225	ATC ...	IHV ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	sORF	BMDC
703945	165	CTG ...	LVP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	B_cell
36122	39	GTG ...	VRG ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell, Testis
36023	54	ATG ...	MDF ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	sORF	B_cell, BMDC, C2C12, MEF, Spleen_B_cell, Testis
382338	246	GTG ...	VQA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
481214	36	TTG ...	LHG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
704321	57	ATG ...	MSH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	BMDC
705040	93	GTG ...	VAA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF	B_cell, BMDC
38459	165	CTG ...	LPE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell, Testis
383245	291	ATG ...	MAR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
483810	84	CTG ...	LPQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
478359	69	CTG ...	LTP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell

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