Transcript 445660

Transcript

ID CARD

MetamORF ID

445660

ENSMUST00000140193

Name

Blmh-203

Strand

Biotype

retained_intron

Start-end positions

76945739-76967861

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:104184

Aliases

AI035728,
Bh, Blmh, Bmh,
ENSMUSG00000020840, MGI:1345186, NCBI:104184,
OFF:Blmh

Chr 11

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
774089	36	CTG ...	LKM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
22073	66	CTG ...	LKT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
771547	63	CTG ...	LCG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, R1E
8229	48	TTG ...	LPR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
305549	54	TTG ...	LAV ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, R1E
294572	48	GTG ...	VML ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, R1E
933470	33	AAG ...	KIK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
295095	54	CTG ...	LLF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
931419	225	TTG ...	LNA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
311374	39	ATG ...	MSG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC
453883	54	CTG ...	LFG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
8541	93	ATG ...	MCF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
772287	30	ATG ...	MGD ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
932535	33	AAG ...	KQF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
8752	66	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
8367	90	ATG ...	MPS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
450480	45	GTG ...	VEP ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell
8478	69	GTG ...	VWF ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, MEF, R1E
8866	246	TTG ...	LIQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
930789	48	AAG ...	KNL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
303425	42	TTG ...	LEN ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, R1E
772850	63	TTG ...	LWT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
17971	57	CTG ...	LKT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
301845	48	ATG ...	MLS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
308765	45	ATG ...	MLE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, R1E
933755	249	AAG ...	KYN ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
300620	69	ATG ...	MLL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC

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