Transcript 275880

Transcript

ID CARD

MetamORF ID

275880

ENSMUST00000141945

Name

Bgn-205

Strand

Biotype

retained_intron

Start-end positions

73483623-73492398

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:12111

Aliases

BG,
Bgn, DSPG1, ENSMUSG00000031375,
MGI:88158, NCBI:12111, OFF:Bgn,
PG-S1, PGI, SLRR1A

Chr X

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
281252	225	CTG ...	LSQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
278164	165	CTG ...	LVE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
278563	204	CTG ...	LRK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
275879	252	CTG ...	LWL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, C2C12
277048	132	CTG ...	LVE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
284534	252	TTG ...	LVN ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
283314	165	CTG ...	LLM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
278693	195	CTG ...	LQK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
280239	105	CTG ...	LDS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
283905	162	GTG ...	VEI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
277572	45	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
7316	39	CTG ...	LCP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
280116	234	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
280280	258	CTG ...	LVL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
7137	57	ATG ...	MTT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
417873	33	ACG ...	TDR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	C2C12
7273	51	TTG ...	LSR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
282322	48	GTG ...	VSF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
88756	141	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	C2C12
281950	213	TTG ...	LPF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, C2C12
279004	231	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
279920	237	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, C2C12
278880	162	CTG ...	LKT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
89069	57	GTG ...	VSP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
279673	144	CTG ...	LPS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
281233	153	GTG ...	VPK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
279216	177	TTG ...	LDD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, C2C12

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