Transcript 60784 | MetamORF

Transcript

ID CARD

MetamORF ID

60784

ENSMUST00000030121

Name

B4galt1-201

Strand

Biotype

protein_coding

Start-end positions

40804602-40854005

CDS Start-stop positions

40807185-40853805

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:14595

Aliases

B-1,4-GalT,
B-1,4-GalT1, b4Gal-T1, B4galt1,
beta-1,4-GalT, beta-1,4-GalT1, beta4Gal-T1,
ENSMUSG00000028413, GalT, Ggtb,
Ggtb2, MGI:95705, NCBI:14595,
OFF:B4galt1

Chr 4

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
896500	66	ATC ...	ITS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
509230	48	TTG ...	LTG ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
510361	102	CTG ...	LWS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Spleen_B_cell
826723	72	TTG ...	LPS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
823743	75	CTG ...	LAG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell
896506	57	ATC ...	IPS ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
513870	39	GTG ...	VSN ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
826960	102	GTG ...	VSL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
897234	45	AGG ...	REV ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
512051	57	TTG ...	LTL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
509127	42	CTG ...	LWI ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
827151	96	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14
514309	300	ATG ...	MNE ...	Ribo-seq	ATG		5	sORFs_org_Mouse	CDS sORF	3T3, B_cell, Liver, R1E, Spleen_B_cell
60783	282	TTG ...	LQL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	CDS sORF	B_cell, Liver, R1E, Spleen_B_cell, Testis
515738	120	ATG ...	MFS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
510288	45	TTG ...	LLW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
512521	60	CTG ...	LET ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
512351	132	GTG ...	VSS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Spleen_B_cell
899060	132	ACG ...	TTV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
514081	138	GTG ...	VSL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Neutrophil, Spleen_B_cell
512917	54	GTG ...	VFF ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell, v6-5
1379418	45	CTG ...	LCL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
825121	102	CTG ...	LAV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
514394	195	GTG ...	VSL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Neutrophil, Spleen_B_cell
827223	108	TTG ...	LEV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
901152	114	ATC ...	IPS ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
61025	285	ATG ...	MLQ ...	Ribo-seq	ATG		6	sORFs_org_Mouse	CDS sORF	3T3, B_cell, Liver, R1E, Spleen_B_cell, Testis
1230736	219	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
897913	39	ATA ...	ICS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
825706	63	CTG ...	LRA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell
61031	276	CTG ...	LGY ...	Ribo-seq	CTG		7	sORFs_org_Mouse	CDS sORF	3T3, B_cell, Brain, Liver, R1E, Spleen_B_cell, Testis
826745	63	CTG ...	LDC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
896573	78	AGG ...	RHV ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
826570	63	ATG ...	MDS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14

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