Transcript 469557

Transcript

ID CARD

MetamORF ID

469557

ENSMUST00000152833

Name

Azin1-208

Strand

Biotype

processed_transcript

Start-end positions

38514472-38519250

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

NCBI:54375

Aliases

1700085L02Rik,
AZI, Azin1, ENSMUSG00000037458,
MGI:1859169, NCBI:54375, Oazi,
Oazin, OFF:Azin1

Chr 15

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
950229	285	ACG ...	TRL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
11420	54	CTG ...	LYR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Spleen_B_cell
31946	39	TTG ...	LGI ...	Ribo-seq	TTG	optimal	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
31843	285	CTG ...	LLC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
31993	90	GTG ...	VPR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
950427	225	ATT ...	ISP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
31984	243	CTG ...	LLC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
689417	210	CTG ...	LPP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, Neutrophil
31369	264	CTG ...	LNP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
32548	207	CTG ...	LRS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
686553	42	CTG ...	LLF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
473350	288	GTG ...	VTR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell, v6-5
31004	54	ATG ...	MAQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
30581	195	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
950214	198	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
473156	300	CTG ...	LLC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, Neutrophil, Spleen_B_cell, v6-5
31287	96	GTG ...	VSV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
31365	102	CTG ...	LLK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
11349	57	GTG ...	VLY ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
31521	288	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
32527	273	GTG ...	VTR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
31976	99	CTG ...	LVS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
1354319	195	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
31838	183	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
690882	279	CTG ...	LNP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Neutrophil, v6-5
30722	33	CTG ...	LTE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
31199	180	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell

Export data