Transcript 364675

Transcript

ID CARD

MetamORF ID

364675

ENSMUST00000110329

Name

Azin1-203

Strand

Biotype

protein_coding

Start-end positions

38488238-38519263

CDS Start-stop positions

38490361-38501505

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

NCBI:54375

Aliases

1700085L02Rik,
AZI, Azin1, ENSMUSG00000037458,
MGI:1859169, NCBI:54375, Oazi,
Oazin, OFF:Azin1

Chr 15

ORFs

89 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
365084	48	ATG ...	MLD ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
32783	99	CTG ...	LLK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, NSC, v6-5
366379	66	ATG ...	MYM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
31521	288	CTG ...	LLL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil, v6-5
356112	45	TTG ...	LEM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
31418	42	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
788417	36	ATG ...	MVL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, v6-5
359559	87	ATG ...	MSL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
357213	87	GTG ...	VSS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
359819	30	ATG ...	MTF ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
11420	54	CTG ...	LYR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	sORF Upstream	E14, MEF, Neutrophil, v6-5
32673	180	CTG ...	LLL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, NSC, v6-5
31369	264	CTG ...	LNP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil, v6-5
31004	54	ATG ...	MAQ ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, NSC
31946	39	TTG ...	LGI ...	Ribo-seq	TTG	optimal	3	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, NSC
30722	33	CTG ...	LTE ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil, v6-5
31287	96	GTG ...	VSV ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, NSC, v6-5
32527	273	GTG ...	VTR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil, v6-5
359569	93	TTG ...	LTM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
949756	300	ATC ...	ILL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
33111	102	GTG ...	VEA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
788196	39	TTG ...	LYS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
948000	39	ATA ...	IQL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
31199	180	CTG ...	LLS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, v6-5
788844	54	TTG ...	LSP ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, MEF, Neutrophil
31993	90	GTG ...	VPR ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, NSC, v6-5
360909	72	TTG ...	LAC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
359172	75	CTG ...	LLL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
354773	48	GTG ...	VMS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
363665	33	TTG ...	LIT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
365009	42	TTG ...	LEM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
30581	195	CTG ...	LPP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil, v6-5
359503	72	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
366058	30	TTG ...	LIT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
365559	57	ATG ...	MKE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
359592	81	ATG ...	MFQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
685927	45	ATG ...	MVF ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
358454	87	ATG ...	MRT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
470175	96	CTG ...	LAQ ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF Upstream	BMDC, MEF
31365	102	CTG ...	LLK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, NSC, v6-5
365235	51	CTG ...	LML ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
365019	96	ATG ...	MYQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, v6-5
684865	42	GTG ...	VFM ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
366455	81	CTG ...	LKC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
365502	60	ATG ...	MPC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
681668	48	ATG ...	MMV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
31843	285	CTG ...	LLC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil, v6-5
950073	297	ATC ...	ILL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
33211	285	CTG ...	LLL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, v6-5
32778	261	CTG ...	LNP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, v6-5
31745	66	TTG ...	LVA ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, v6-5
31585	51	TTG ...	LFF ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, v6-5
365191	90	TTG ...	LTM ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, v6-5
33199	270	GTG ...	VTR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, v6-5
359258	69	CTG ...	LPG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
31525	42	CTG ...	LVY ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, v6-5
682614	39	TTG ...	LQR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
31838	183	CTG ...	LLL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, v6-5
31976	99	CTG ...	LVS ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, E14, MEF, Neutrophil, NSC, v6-5
1618152	30	TTG ...	LWK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
31604	63	GTG ...	VAR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, v6-5
364674	111	GTG ...	VWT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF
421614	51	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1001771	39	ATG ...	MRC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
32548	207	CTG ...	LRS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil, v6-5
365167	99	ATG ...	MFQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
32875	192	CTG ...	LPP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil, NSC, v6-5
357971	72	GTG ...	VAD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
472273	57	ATG ...	MLS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
358721	72	TTG ...	LLP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
358514	30	TTG ...	LLH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
421338	54	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
357910	45	ATG ...	MKD ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
354736	39	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
364391	63	TTG ...	LRS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
31984	243	CTG ...	LLC ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil, NSC, v6-5
473481	48	GTG ...	VIG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF
11349	57	GTG ...	VLY ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	sORF Upstream	E14, MEF, Neutrophil, v6-5
365462	90	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
355055	90	TTG ...	LVS ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
362316	39	TTG ...	LIK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
364633	69	TTG ...	LAC ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, v6-5
32663	282	CTG ...	LLC ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, v6-5
365326	36	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
365146	84	ATG ...	MRT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, v6-5
354657	60	ATG ...	MKE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
32850	177	CTG ...	LLS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, NSC, v6-5
686553	42	CTG ...	LLF ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, MEF, Neutrophil, NSC
362794	45	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF

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