Transcript 30582 | MetamORF

Transcript

ID CARD

MetamORF ID

30582

ENSMUST00000110328

Name

Azin1-202

Strand

Biotype

protein_coding

Start-end positions

38489454-38519227

CDS Start-stop positions

38491639-38501505

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:54375

Aliases

1700085L02Rik,
AZI, Azin1, ENSMUSG00000037458,
MGI:1859169, NCBI:54375, Oazi,
Oazin, OFF:Azin1

Chr 15

ORFs

86 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
365146	84	ATG ...	MRT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, MEF
948245	51	ACG ...	TLY ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
950324	99	AAG ...	KDL ...	Ribo-seq	AAG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
31365	102	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
356112	45	TTG ...	LEM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
359559	87	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, MEF
31525	42	CTG ...	LVY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
421720	99	ATA ...	IES ...	Ribo-seq	ATA		3	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12, E14
949756	300	ATC ...	ILL ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
11420	54	CTG ...	LYR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	MEF, Testis
681668	48	ATG ...	MMV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
949182	210	ATT ...	ISP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
1184786	117	AGG ...	RPP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
354736	39	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
32875	192	CTG ...	LPP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, C2C12, E14, Spleen_B_cell, Testis
31976	99	CTG ...	LVS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Testis
948668	72	ATA ...	IGL ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
32673	180	CTG ...	LLL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Spleen_B_cell, Testis
33199	270	GTG ...	VTR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Spleen_B_cell, Testis
362792	42	ATG ...	MPC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
31521	288	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14, Testis
364945	75	CTG ...	LSH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
11349	57	GTG ...	VLY ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	BMDC, MEF
366379	66	ATG ...	MYM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
686855	30	GTG ...	VMS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
31199	180	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
359819	30	ATG ...	MTF ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF
365502	60	ATG ...	MPC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell
686553	42	CTG ...	LLF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
684865	42	GTG ...	VFM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
421511	192	ATA ...	IES ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12
365235	51	CTG ...	LML ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
788844	54	TTG ...	LSP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	MEF
684401	36	ATG ...	MGV ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
690386	45	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
364039	78	TTG ...	LTN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream Overlapping sORF	Brain, R1E
469855	33	TTG ...	LEL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
32783	99	CTG ...	LLK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, R1E, Spleen_B_cell, Testis
31946	39	TTG ...	LGI ...	Ribo-seq	TTG	optimal	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
359569	93	TTG ...	LTM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
32548	207	CTG ...	LRS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
949923	267	ACG ...	TRL ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
365167	99	ATG ...	MFQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
365084	48	ATG ...	MLD ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
365191	90	TTG ...	LTM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
32778	261	CTG ...	LNP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, Spleen_B_cell, Testis
31838	183	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Testis
354657	60	ATG ...	MKE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
470578	51	TTG ...	LRS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
950068	48	ACG ...	TLY ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
365462	90	GTG ...	VLA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
421338	54	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
689067	93	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
31984	243	CTG ...	LLC ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14, Testis
364633	69	TTG ...	LAC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
33211	285	CTG ...	LLL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, Spleen_B_cell, Testis
949777	171	ATC ...	ILS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
31004	54	ATG ...	MAQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Testis
949595	72	ACG ...	TSS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
32527	273	GTG ...	VTR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
471561	57	GTG ...	VYL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
358514	30	TTG ...	LLH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
685927	45	ATG ...	MVF ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
472273	57	ATG ...	MLS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
421614	51	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
689376	63	ATG ...	MPR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
421290	168	CTG ...	LSH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12
949193	270	ACG ...	TRL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
949867	207	ATT ...	ISP ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
358454	87	ATG ...	MRT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
364391	63	TTG ...	LRS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
688841	81	TTG ...	LQG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
30722	33	CTG ...	LTE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Testis
360909	72	TTG ...	LAC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
357971	72	GTG ...	VAD ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
30581	195	CTG ...	LPP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12, Testis
31369	264	CTG ...	LNP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
31993	90	GTG ...	VPR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
33111	102	GTG ...	VEA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
365559	57	ATG ...	MKE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
32850	177	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, Spleen_B_cell, Testis
950073	297	ATC ...	ILL ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
31843	285	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
948000	39	ATA ...	IQL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
32663	282	CTG ...	LLC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Spleen_B_cell, Testis
421517	102	AAG ...	KDL ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12

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