Transcript 33112 | MetamORF

Transcript

ID CARD

MetamORF ID

33112

ENSMUST00000065308

Name

Azin1-201

Strand

Biotype

protein_coding

Start-end positions

38487430-38519266

CDS Start-stop positions

38490361-38501505

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:54375

Aliases

1700085L02Rik,
AZI, Azin1, ENSMUSG00000037458,
MGI:1859169, NCBI:54375, Oazi,
Oazin, OFF:Azin1

Chr 15

ORFs

63 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
32875	192	CTG ...	LPP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain
33111	102	GTG ...	VEA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
360909	72	TTG ...	LAC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
31976	99	CTG ...	LVS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
788844	54	TTG ...	LSP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	sORF Upstream	Brain, MEF, NSC
354736	39	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
32778	261	CTG ...	LNP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
365009	42	TTG ...	LEM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
31946	39	TTG ...	LGI ...	Ribo-seq	TTG	optimal	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
32527	273	GTG ...	VTR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
31199	180	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
470175	96	CTG ...	LAQ ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Brain, E14, MEF, Spleen_B_cell
473481	48	GTG ...	VIG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E, Spleen_B_cell
365146	84	ATG ...	MRT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
31838	183	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
32548	207	CTG ...	LRS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
1537866	78	TTG ...	LIT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
365167	99	ATG ...	MFQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
32783	99	CTG ...	LLK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
31984	243	CTG ...	LLC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
1538775	42	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
32850	177	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
684865	42	GTG ...	VFM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
788196	39	TTG ...	LYS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
33199	270	GTG ...	VTR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
31745	66	TTG ...	LVA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF
364633	69	TTG ...	LAC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
364945	75	CTG ...	LSH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	Brain
681668	48	ATG ...	MMV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
31604	63	GTG ...	VAR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF
686553	42	CTG ...	LLF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	Brain, MEF
365462	90	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
365559	57	ATG ...	MKE ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
366058	30	TTG ...	LIT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
365235	51	CTG ...	LML ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
31004	54	ATG ...	MAQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
365191	90	TTG ...	LTM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
1538121	33	ATG ...	MIF ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
11349	57	GTG ...	VLY ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	Brain, MEF
364391	63	TTG ...	LRS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
365084	48	ATG ...	MLD ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
31521	288	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
32673	180	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
11420	54	CTG ...	LYR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
31525	42	CTG ...	LVY ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF
365326	36	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
33211	285	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
359819	30	ATG ...	MTF ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
366379	66	ATG ...	MYM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1538790	99	ATG ...	MWE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
354657	60	ATG ...	MKE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
31369	264	CTG ...	LNP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
30581	195	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain
365502	60	ATG ...	MPC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
471561	57	GTG ...	VYL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
31287	96	GTG ...	VSV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
31993	90	GTG ...	VPR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
31585	51	TTG ...	LFF ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF
359569	93	TTG ...	LTM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
32663	282	CTG ...	LLC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
31843	285	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
31365	102	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
358454	87	ATG ...	MRT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

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