Transcript 769902

Transcript

ID CARD

MetamORF ID

769902

ENSMUST00000126576

Name

Aurkb-203

Strand

Biotype

retained_intron

Start-end positions

69045690-69048296

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:20877

Aliases

Aik2,
AIM-1, Aim1, AIRK2,
AL022959, Ark2, AurB,
Aurkb, ENSMUSG00000020897, IPL1,
MGI:107168, NCBI:20877, OFF:Aurkb,
STK-1, Stk12, Stk5

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1285614	210	AAG ...	KER ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
446825	135	CTG ...	LRL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil
1037180	57	TTG ...	LAE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1289662	246	TTG ...	LPS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
639972	156	CTG ...	LPA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil
931625	234	TTG ...	LFP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
448503	90	CTG ...	LIG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil
649880	171	CTG ...	LTR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil
931172	231	ACG ...	TCP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
452283	117	CTG ...	LRG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil
452335	243	TTG ...	LGG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil
447462	294	TTG ...	LRG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil
446912	108	CTG ...	LQW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil
453851	174	GTG ...	VLT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
932596	93	AAG ...	KEN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1289209	198	AGG ...	RST ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
452508	270	GTG ...	VVH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil
1287881	36	ACG ...	TPT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14

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