Transcript 89255 | MetamORF

Transcript

ID CARD

MetamORF ID

89255

ENSMUST00000165438

Name

Atxn7l3b-202

Strand

Biotype

processed_transcript

Start-end positions

112927789-112929001

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:382423

Aliases

4921506J03Rik,
6230409E21Rik, AI315132, Atxn7l3b,
ENSMUSG00000074748, MGI:1914971, NCBI:382423,
OFF:Atxn7l3b

Chr 10

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
243426	222	CTG ...	LIE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Spleen_B_cell
163922	204	CTG ...	LGF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
158667	216	CTG ...	LGE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
78280	123	TTG ...	LGL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
58091	42	GTG ...	VAT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, v6-5
257907	129	GTG ...	VKD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
186096	78	TTG ...	LLS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
73542	147	GTG ...	VQL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
611784	279	TTG ...	LAN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
526644	75	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
444959	156	GTG ...	VIV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Spleen_B_cell
266035	255	CTG ...	LEA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
56904	180	GTG ...	VWL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
523725	45	TTG ...	LPS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
175023	105	GTG ...	VED ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
284514	69	GTG ...	VRR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
176391	186	GTG ...	VHR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
278259	270	CTG ...	LDT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
62181	147	GTG ...	VIV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
59651	84	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
445180	225	CTG ...	LGE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Spleen_B_cell
257399	153	CTG ...	LEF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
227638	126	TTG ...	LGD ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF
78210	114	GTG ...	VSK ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, v6-5
76578	66	TTG ...	LRC ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, v6-5
66708	99	GTG ...	VPP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
89254	132	TTG ...	LGL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Spleen_B_cell, Testis
219269	30	CTG ...	LQR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain

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