Transcript 16430 | MetamORF

Transcript

ID CARD

MetamORF ID

16430

ENSMUST00000155474

Name

Atp5g3-205

Strand

Biotype

processed_transcript

Start-end positions

73909318-73911291

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:228033

Aliases

6030447M23,
Atp5g3, Atp5mc3, ENSMUSG00000018770,
MGI:2442035, NCBI:228033, OFF:Atp5g3

Chr 2

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
103005	129	GTG ...	VYS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Neutrophil, NSC
15543	57	GTG ...	VLS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC
123362	153	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, C2C12
108248	156	CTG ...	LGG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, Neutrophil
971243	126	AAG ...	KLA ...	Ribo-seq	AAG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, Liver, MEF
14900	75	CTG ...	LDP ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
16429	105	CTG ...	LIR ...	Ribo-seq	CTG		22	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
44727	39	CTG ...	LRQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14, MEF, Neutrophil, v6-5
15229	45	CTG ...	LHQ ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
862670	75	TTG ...	LTF ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
100655	30	ATG ...	MGP ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
15434	63	TTG ...	LHI ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
1503596	87	GTG ...	VIT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	NSC
118995	165	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, C2C12

Export data