Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

957920

ID

ENSMUST00000135678

Name

Atp5a1-204

Strand

+

Biotype

nonsense_mediated_decay

Start-end positions

77773992-77782655

CDS Start-stop positions

77774051-77781859

CDS Relative positions

-

Sequences

Transcript sequence

TTT ...

Gene

ID

NCBI:11946

Aliases

AI035633,
AL022851, AL023067, Atp5a1,
Atp5f1a, Atpm, D18Ertd206e,
ENSMUSG00000025428, MGI:88115, Mom2,
NCBI:11946, OFF:Atp5a1


Chr 18

ORFs

133 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

13630 48

ATG ...

MGK ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
BMDC, MEF, R1E
1006266 132

GTG ...

VLS ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
1006232 93

CTG ...

LRN ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
958148 60

AAG ...

KHA ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC
486519 33

TTG ...

LVM ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
41024 168

ATG ...

MRV ...

Ribo-seq
ATG 1 Johnstone2016
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
40630 72

CTG ...

LQG ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    NMD
    Overlapping
    sORF
    Upstream
BMDC, Brain, MEF,
NSC, R1E
485999 54

CTG ...

LVM ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1006605 69

GTG ...

VRV ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, NSC,
R1E
40546 144

GTG ...

VYG ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
BMDC, Brain, R1E
959146 72

ACG ...

TRR ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
958328 156

ATC ...

IVV ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC
40493 147

CTG ...

LLE ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
40157 42

CTG ...

LTR ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
393256 114

CTG ...

LSL ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
39832 60

GTG ...

VMC ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
958612 123

AAG ...

KKK ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
1006134 141

GTG ...

VGL ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
1006591 78

TTG ...

LSF ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
Brain, MEF, R1E
486365 51

GTG ...

VMC ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
13615 81

ATG ...

MGP ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1005913 174

CTG ...

LGA ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
801766 36

TTG ...

LVR ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
486390 36

ATG ...

MLE ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
40665 150

ATG ...

MRV ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
BMDC, Brain, R1E
1006560 75

CTG ...

LSV ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, NSC,
R1E
40794 33

CTG ...

LLT ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF
1005953 126

CTG ...

LYH ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
40614 75

TTG ...

LKH ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
397260 66

GTG ...

VRP ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
801136 90

TTG ...

LVQ ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, NSC
39552 213

CTG ...

LLL ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
13678 99

TTG ...

LTA ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
395749 39

TTG ...

LVL ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
958820 63

AGG ...

RPI ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
801556 45

CTG ...

LWI ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
393476 99

CTG ...

LEL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
40710 111

TTG ...

LAP ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
958374 30

ATT ...

ILF ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
13621 78

CTG ...

LHL ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1006452 210

GTG ...

VFG ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, R1E
1006312 51

GTG ...

VAR ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
Brain, R1E
958959 66

AGG ...

RYH ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
801253 33

TTG ...

LVP ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, R1E
1456381 90

ATG ...

MLS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
BMDC
1005911 102

GTG ...

VHG ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
392968 87

CTG ...

LTL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
40194 210

TTG ...

LLR ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
40259 33

ATG ...

MLF ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
958106 138

TTG ...

LDA ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF
397812 42

ATG ...

MFK ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
958372 78

ATC ...

ISM ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
958304 117

CTG ...

LEP ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
BMDC, Brain, R1E
1006530 99

TTG ...

LSS ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
958586 39

ATA ...

IAW ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
1006599 171

GTG ...

VKR ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain
958166 96

GTG ...

VGL ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, R1E
959110 66

AGG ...

RLV ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
392816 54

CTG ...

LRL ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1456458 81

GTG ...

VDF ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, R1E
40227 90

CTG ...

LPY ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1006455 135

CTG ...

LKA ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
1456391 84

GTG ...

VSR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
1006090 159

GTG ...

VAV ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
1006524 102

GTG ...

VRE ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
959154 72

ATG ...

MPL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain
957919 159

ATC ...

INQ ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
394904 81

CTG ...

LPR ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1006001 57

GTG ...

VPI ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
801088 33

TTG ...

LEL ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
715621 48

TTG ...

LPS ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
40012 63

CTG ...

LVM ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1006576 30

CTG ...

LII ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
959243 54

AGG ...

RRH ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC
484511 30

GTG ...

VPS ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, NSC,
R1E
394875 54

ATG ...

MWV ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1006572 147

TTG ...

LVK ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF
397516 63

CTG ...

LPL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
13387 60

GTG ...

VSA ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1006243 105

TTG ...

LAR ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF
801842 30

TTG ...

LTW ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF
40804 159

CTG ...

LLS ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
BMDC, Brain, R1E
1456364 129

TTG ...

LFY ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, R1E
1006200 186

TTG ...

LAQ ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
395096 72

CTG ...

LVV ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1006081 78

TTG ...

LSH ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
Brain
392636 42

CTG ...

LCP ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1005971 144

GTG ...

VKE ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF
40351 129

TTG ...

LTN ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
BMDC, Brain, R1E
1006217 69

GTG ...

VDS ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
397744 114

TTG ...

LTQ ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1456588 168

GTG ...

VAA ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
39834 150

GTG ...

VSA ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
39699 126

ATG ...

MSV ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1456132 51

TTG ...

LII ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF
1456783 81

GTG ...

VCS ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
485290 48

ATG ...

MCS ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
39968 168

GTG ...

VFY ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
13358 114

CTG ...

LYC ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
958512 33

GTG ...

VSD ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
39799 81

CTG ...

LRC ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
1006206 243

CTG ...

LNL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
394585 57

CTG ...

LCA ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, NSC,
R1E
1006479 192

CTG ...

LEL ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
957966 237

TTG ...

LEP ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
1006574 180

GTG ...

VAD ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
Brain
1005884 114

ATG ...

MSP ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
NSC
13393 51

CTG ...

LMG ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
MEF, R1E
1006399 150

CTG ...

LEE ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
40497 57

ATG ...

MCP ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
802648 87

GTG ...

VQE ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
NSC
40341 114

TTG ...

LDC ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1005898 192

TTG ...

LQL ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
40094 144

CTG ...

LER ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
958049 90

TTG ...

LSV ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, R1E
398580 120

TTG ...

LPL ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
40428 174

TTG ...

LKN ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
486102 111

ATG ...

MLW ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
Neutrophil, NSC
396183 93

CTG ...

LPL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
801315 30

GTG ...

VMV ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1719829 72

GTG ...

VAQ ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
MEF
1006301 210

GTG ...

VAG ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1456708 177

GTG ...

VLG ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
958109 114

ATC ...

IRP ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC
802683 93

TTG ...

LLV ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, NSC
856965 33

CTG ...

LIW ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
40041 153

GTG ...

VVS ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
1006433 60

CTG ...

LVP ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
1456617 96

TTG ...

LRM ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    sORF
BMDC, R1E
1006642 150

GTG ...

VDV ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain
393960 78

CTG ...

LCG ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
1456674 141

TTG ...

LET ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
BMDC, MEF, R1E
958238 171

AAG ...

KNR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    Downstream
    NMD
    Overlapping
    sORF
BMDC

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5