Transcript 132700

Transcript

ID CARD

MetamORF ID

132700

ENSMUST00000198599

Name

Atp11b-207

Strand

Biotype

protein_coding

Start-end positions

35789606-35856274

CDS Start-stop positions

-35849536

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

NCBI:76295

Aliases

1110019I14Rik,
Atp11b, ATPIF, ATPIR,
ENSMUSG00000037400, MGI:1923545, mKIAA0956,
NCBI:76295, OFF:Atp11b

Chr 3

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1222724	42	ATG ...	MHR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	E14
142785	126	CTG ...	LER ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	Brain, Neutrophil, R1E, v6-5
142426	57	ATG ...	MNL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, R1E
144956	183	TTG ...	LDS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	Brain, Neutrophil, R1E, v6-5
52265	81	TTG ...	LWN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Brain
1058287	174	GTG ...	VCC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	Neutrophil, R1E, v6-5
54295	36	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Brain
143187	72	CTG ...	LKK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	Brain, MEF, R1E
1174288	60	TTG ...	LET ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	v6-5
1173815	45	TTG ...	LVL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	v6-5

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