Transcript 41345 | MetamORF

Transcript

ID CARD

MetamORF ID

41345

ENSMUST00000049948

Name

Asrgl1-201

Strand

Biotype

protein_coding

Start-end positions

9109868-9135636

CDS Start-stop positions

9113000-9135554

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:66514

Aliases

2410004D18Rik,
ALP, ALP1, Asrgl1,
AU040643, AW060375, ENSMUSG00000024654,
MGI:1913764, NCBI:66514, OFF:Asrgl1

Chr 19

ORFs

47 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
404355	93	ATG ...	MAS ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, NSC
42480	42	TTG ...	LEP ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Testis
42859	30	TTG ...	LAE ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, R1E, Spleen_B_cell, Testis
1500753	156	TTG ...	LRW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
403878	63	GTG ...	VDL ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Spleen_B_cell
407434	72	TTG ...	LTS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, NSC
410686	63	TTG ...	LTS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Spleen_B_cell
43597	153	TTG ...	LRR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Testis
41648	75	CTG ...	LGG ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC, Spleen_B_cell, Testis
42806	36	TTG ...	LQK ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, NSC, Spleen_B_cell, Testis
1500491	132	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
1201053	81	AAG ...	KYP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
41727	51	ATG ...	MVQ ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, Testis
1202407	81	AGG ...	RPA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
409845	90	CTG ...	LQV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
402185	114	ATG ...	MVA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
410774	84	GTG ...	VQC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
41344	102	GTG ...	VLL ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, NSC, Testis
407095	57	CTG ...	LAM ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Spleen_B_cell
43141	135	ATG ...	MLT ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, NSC, Testis
402636	84	TTG ...	LLS ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, NSC, Spleen_B_cell, v6-5
410455	240	ATG ...	MPS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, NSC, Spleen_B_cell
410209	129	TTG ...	LRW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
409012	243	CTG ...	LMP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, NSC, Spleen_B_cell
404908	63	GTG ...	VRP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, NSC
402603	42	CTG ...	LGS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Spleen_B_cell
1204074	147	ATG ...	MLV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC
1204053	51	ATA ...	IIT ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
42967	78	GTG ...	VAS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Testis
43215	132	CTG ...	LTA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Testis
42705	96	TTG ...	LPW ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, NSC, Testis
41838	48	GTG ...	VQR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, NSC, Spleen_B_cell, Testis
41892	54	CTG ...	LGG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Testis
42988	45	TTG ...	LSI ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Testis
43455	189	CTG ...	LRE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Testis
42829	51	CTG ...	LQR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, NSC, Testis, v6-5
41405	99	CTG ...	LLP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Testis
409559	33	TTG ...	LLW ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, NSC, v6-5
410118	75	CTG ...	LPC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
1500476	162	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
42693	66	CTG ...	LEV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC, Testis
408950	120	ATG ...	MLV ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, NSC
43238	51	CTG ...	LSW ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Testis
1008100	135	GTG ...	VIL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
43289	42	TTG ...	LHG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, NSC, Testis, v6-5
410511	105	ATG ...	MGR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
41431	108	CTG ...	LWV ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Testis

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