Transcript 5104 | MetamORF

Transcript

ID CARD

MetamORF ID

5104

ENSMUST00000110417

Name

Asah1-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

41346180-41374635

CDS Start-stop positions

41354912-41374584

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:11886

Aliases

2310081N20Rik,
AC, Asah, Asah1,
ENSMUSG00000031591, MGI:1277124, NCBI:11886,
OFF:Asah1

Chr 8

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1072439	39	GTG ...	VDQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Neutrophil
1521375	45	TTG ...	LVS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
1072775	90	TTG ...	LFT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	Neutrophil
917492	72	AAG ...	KSS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
249067	60	CTG ...	LGP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Spleen_B_cell
1748398	39	TTG ...	LAQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
242286	45	CTG ...	LFS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
240356	111	TTG ...	LRI ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC
249016	54	TTG ...	LQK ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	C2C12, E14, Liver, MEF, NSC
242662	36	CTG ...	LRP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, NSC, Spleen_B_cell
5103	63	TTG ...	LGC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	MEF, Skin_tumor
80518	105	GTG ...	VNL ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, E14, MEF, Neutrophil, NSC, v6-5
245487	78	GTG ...	VNT ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, Liver, MEF, Neutrophil, NSC, v6-5
243222	42	ATG ...	MGE ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil, v6-5
1263513	117	AAG ...	KPL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1327055	66	CTG ...	LFF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF
1071035	99	GTG ...	VNS ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC
243084	42	GTG ...	VGM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1262320	51	ATT ...	IYY ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1261837	48	AAG ...	KWK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
239408	66	GTG ...	VDR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Liver, MEF, NSC, v6-5
248159	66	GTG ...	VPS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, Liver, MEF, Neutrophil, NSC
1261403	81	AGG ...	RGI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
78945	99	TTG ...	LDF ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, E14, MEF, Neutrophil, v6-5

Export data