Transcript 4828 | MetamORF

Transcript

ID CARD

MetamORF ID

4828

ENSMUST00000047321

Name

Arntl-201

Strand

Biotype

protein_coding

Start-end positions

113207465-113314126

CDS Start-stop positions

113280663-113313619

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:11865

Aliases

Arnt3,
Arntl, bHLHe5, Bmal1,
BMAL1b, bmal1b', ENSMUSG00000055116,
MGI:1096381, MOP3, NCBI:11865,
OFF:Arntl

Chr 7

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4827	66	TTG ...	LEP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF Upstream	MEF, R1E, Skin_tumor
1517454	45	CTG ...	LPG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	NSC
593465	60	TTG ...	LLA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, NSC
214192	48	GTG ...	VNA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	MEF, R1E
916447	42	ATG ...	MWN ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF Upstream	BMDC, MEF, R1E, v6-5
5000	72	ATG ...	MLL ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	sORF Upstream	Glioma, Liver, MEF, MESC, R1E, Skin_tumor
1671692	42	CTG ...	LDR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	MEF
1674656	42	TTG ...	LEE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF Upstream	MEF
416002	123	ATG ...	MWN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF Upstream	BMDC
1813922	39	CTG ...	LAT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
592693	45	ATG ...	MVL ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
592982	63	GTG ...	VLL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, NSC
228572	39	ATG ...	MVQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1818110	72	CTG ...	LHN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
218022	57	TTG ...	LAA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, NSC

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