Transcript 254284

Transcript

ID CARD

MetamORF ID

254284

ENSMUST00000072634

Name

Aplp2-201

Strand

Biotype

protein_coding

Start-end positions

31149557-31211791

CDS Start-stop positions

31150871-31211727

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:11804

Aliases

AI790698,
APLP-2, Aplp2, CDEBP,
ENSMUSG00000031996, MGI:88047, NCBI:11804,
OFF:Aplp2

Chr 9

ORFs

110 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
6433	108	ATG ...	MLM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
1270417	69	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1274471	45	AGG ...	RNS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
260164	81	ATG ...	MSS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
884030	66	ATG ...	MPL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
6963	105	TTG ...	LVL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1272055	117	ATC ...	IAF ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
262349	42	GTG ...	VQE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, R1E
6973	108	ATG ...	MLM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, R1E
6697	93	TTG ...	LRP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF
1273564	42	ACG ...	THS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1270229	48	AAG ...	KPR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
924196	39	AGG ...	RTK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1273484	30	AGG ...	RRF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1271628	183	ATC ...	IGG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
273459	123	ATG ...	MTP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
6266	45	ATG ...	MKR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
263731	51	GTG ...	VRT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
270309	96	ATG ...	MRR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
6817	111	TTG ...	LML ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1274789	102	ATT ...	ITM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1572457	225	ATG ...	MVL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
87887	111	ATG ...	MLL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E
271247	72	ATG ...	MST ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, R1E
264519	36	TTG ...	LTQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
267491	69	CTG ...	LTQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
256923	78	TTG ...	LVL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
86814	57	TTG ...	LSC ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
263273	99	CTG ...	LPG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
87270	159	TTG ...	LKK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E
5946	120	ATG ...	MCA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
437553	30	CTG ...	LEW ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
1271864	30	AGG ...	RKT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
266504	42	TTG ...	LEQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
268240	63	GTG ...	VPK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
270668	33	TTG ...	LRK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
84423	84	GTG ...	VLR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
272050	111	CTG ...	LAN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, R1E
925706	60	AAG ...	KSF ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1275713	84	AGG ...	RQN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1275505	72	AAG ...	KPR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
273147	108	TTG ...	LLK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E
6289	102	ATG ...	MCI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF
84327	81	CTG ...	LRT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
272585	69	TTG ...	LEQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
6914	150	GTG ...	VTL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, R1E
6645	132	ATG ...	MAP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
273674	96	CTG ...	LTQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
6396	63	CTG ...	LRG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, R1E
1271531	60	ATA ...	IPF ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
273564	180	GTG ...	VCF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
273131	51	CTG ...	LRE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
6829	171	CTG ...	LPE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, R1E
6355	96	CTG ...	LLT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
265244	69	TTG ...	LQP ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, R1E
87380	147	CTG ...	LPC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E
6550	105	TTG ...	LMC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
271571	135	GTG ...	VTT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
254906	36	CTG ...	LSL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, R1E
259094	42	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
264474	42	TTG ...	LSL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
261320	72	ATG ...	MAA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
5982	78	ATG ...	MIM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF
1272582	105	AAG ...	KLF ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
6805	108	ATG ...	MLV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
925560	72	AAG ...	KKE ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
255900	78	CTG ...	LRP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
273494	93	GTG ...	VRR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
6810	117	GTG ...	VFL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
269151	36	CTG ...	LRI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
6863	105	TTG ...	LMC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, R1E
264697	66	TTG ...	LVP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, R1E
1275254	99	AGG ...	RRV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
266490	126	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1273428	69	ATA ...	ITA ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
273570	54	ATG ...	MLR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
272237	78	ATG ...	MIM ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, R1E
6693	54	CTG ...	LWE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E
1273203	63	AGG ...	RRK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
274588	84	TTG ...	LMS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E
1114684	30	TTG ...	LTR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1273750	69	ATC ...	IAC ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
259129	39	TTG ...	LLS ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF
270136	84	CTG ...	LAN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, R1E
1270976	51	AAG ...	KQP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1276041	93	AAG ...	KRK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1270056	48	AAG ...	KSG ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
273813	42	TTG ...	LEA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF
763788	39	ATG ...	MKA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1275601	57	AGG ...	RRF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
764451	45	CTG ...	LRM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
6453	111	ATG ...	MML ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF
273655	102	CTG ...	LRR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
6992	111	ATG ...	MML ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, R1E
924173	66	ACG ...	TPA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
6277	93	TTG ...	LTR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
436500	57	TTG ...	LAC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
6841	102	ATG ...	MCI ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, R1E
1275850	63	ATC ...	IPS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1274615	90	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
83985	42	GTG ...	VRS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, R1E
1275441	156	ATT ...	ITW ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
259204	57	CTG ...	LEQ ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
1270663	60	AGG ...	RQN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
273550	189	TTG ...	LFP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
260125	60	ATG ...	MLE ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, R1E
1272285	69	AGG ...	RNS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1275794	66	ACG ...	TPA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
6792	93	TTG ...	LRP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, R1E
265037	72	ATG ...	MST ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF

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