Transcript 588128

Transcript

ID CARD

MetamORF ID

588128

ENSMUST00000205673

Name

Ap2s1-205

Strand

Biotype

processed_transcript

Start-end positions

16738538-16748748

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:232910

Aliases

AI043088,
Ap2s1, ENSMUSG00000008036, MGI:2141861,
NCBI:232910, OFF:Ap2s1

Chr 7

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1564816	159	ATG ...	MSR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1575887	216	AAG ...	KWY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1026549	120	CTG ...	LSC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
535200	78	CTG ...	LAS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
1025228	189	GTG ...	VLT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
534452	165	CTG ...	LAS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
1252698	264	ATC ...	IRF ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
531474	135	CTG ...	LCP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
1026299	132	GTG ...	VVP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1257299	255	ATC ...	ILI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
217030	30	ATG ...	MPS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain
1025006	174	ATG ...	MEQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
1025669	129	GTG ...	VPT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
75512	84	CTG ...	LLA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
1025499	177	CTG ...	LIE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1251986	249	ATC ...	IQN ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1024960	222	CTG ...	LAK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

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