Transcript 39729 | MetamORF

Transcript

ID CARD

MetamORF ID

39729

ENSMUST00000115808

Name

Ammecr1l-201

Strand

Biotype

protein_coding

Start-end positions

31759824-31784071

CDS Start-stop positions

31771708-31780755

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:225339

Aliases

5430429D03Rik,
Ammecr1l, AU022236, AU040755,
AW111353, E230022H04Rik, ENSMUSG00000041915,
MGI:2442711, NCBI:225339, OFF:Ammecr1l

Chr 18

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1543682	75	ATG ...	MCS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
39728	42	CTG ...	LLF ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, Liver, Spleen_B_cell, Testis
1197011	105	ATA ...	IAS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1631438	45	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1629984	30	ATG ...	MPV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
396153	36	TTG ...	LEE ...	Ribo-seq	TTG	strong	10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
1631659	36	TTG ...	LKM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1631783	36	ATG ...	MAV ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
39960	42	ATG ...	MEL ...	Ribo-seq	ATG	strong	14	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Testis, v6-5
1629597	39	TTG ...	LLR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1544579	60	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
715614	30	CTG ...	LPI ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF
714937	39	CTG ...	LSP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
1199653	258	ATA ...	ITF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1632484	30	ATG ...	MPV ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
958707	123	ATT ...	IHS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
1456489	54	ATG ...	MAS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
713354	42	ATG ...	MWT ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Glioma, Liver, MEF, MESC, v6-5
1632313	36	TTG ...	LKM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1154949	66	CTG ...	LQH ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver, v6-5
394916	54	TTG ...	LEE ...	Ribo-seq	TTG	strong	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
959160	51	AAG ...	KKE ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
718015	249	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
715207	33	GTG ...	VHL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1198932	126	AAG ...	KIH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
713937	36	ATG ...	MEL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Glioma, Liver, MEF, MESC
399160	78	GTG ...	VSG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Liver, MEF, R1E, v6-5
1198014	120	ATA ...	IPL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14

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