Transcript 130480

Transcript

ID CARD

MetamORF ID

130480

ENSMUST00000044567

Name

Alg5-201

Strand

Biotype

protein_coding

Start-end positions

54735539-54749795

CDS Start-stop positions

54735584-54749344

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:66248

Aliases

1500026A19Rik,
2600005J22Rik, Alg5, AV009521,
AV170001, AW545564, ENSMUSG00000036632,
MGI:1913498, NCBI:66248, OFF:Alg5

Chr 3

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1507792	42	TTG ...	LTM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
750935	36	TTG ...	LTM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
544020	144	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
502602	51	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
748996	51	GTG ...	VSS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
503691	99	GTG ...	VVP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
821011	108	GTG ...	VGK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF
130479	45	GTG ...	VGL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
1507730	36	ATG ...	MAV ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC
502866	111	ATG ...	MPK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
503485	51	CTG ...	LGL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
502541	81	GTG ...	VYS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell
505690	90	CTG ...	LCQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
504036	48	TTG ...	LLC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
144247	150	TTG ...	LHV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
503364	45	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
140991	51	TTG ...	LHV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
504016	30	ATG ...	MAV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
747953	42	ATG ...	MLT ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC

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