Transcript 367630

Transcript

ID CARD

MetamORF ID

367630

ENSMUST00000127454

Name

Alg3-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

20605472-20610731

CDS Start-stop positions

20606904-

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:208624

Aliases

Alg3,
D16Ertd36e, ENSMUSG00000033809, MGI:1098592,
NCBI:208624, not, OFF:Alg3

Chr 16

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
372260	204	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, Liver
369118	33	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
373458	186	CTG ...	LEN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, Liver
367686	30	CTG ...	LQG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
372331	45	GTG ...	VLV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, Liver, R1E
373817	141	TTG ...	LYI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	Brain, Liver
368909	102	CTG ...	LPE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, Liver
372702	57	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
1354983	33	TTG ...	LIY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	E14, R1E
697194	147	CTG ...	LGC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	B_cell
368302	69	CTG ...	LIS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
696807	141	CTG ...	LET ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, B_cell
1408131	60	CTG ...	LPY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Liver
370239	48	TTG ...	LVL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	Brain, E14, R1E
1188100	237	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Liver
694331	75	GTG ...	VPG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	3T3
694670	45	GTG ...	VSI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3
374346	60	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
372351	189	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, Liver
370402	87	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
1409663	48	CTG ...	LWA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Liver
1355547	210	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Liver
693584	117	CTG ...	LSA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	B_cell
372284	207	GTG ...	VLG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Brain, Liver
697442	132	ATG ...	MAT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	3T3, B_cell
371130	120	CTG ...	LGF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	Brain
374818	84	CTG ...	LHR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, Liver
373801	30	CTG ...	LFA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
367629	198	TTG ...	LPF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	Brain, Liver
372440	81	CTG ...	LTG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	Brain

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