Transcript 517061

Transcript

ID CARD

MetamORF ID

517061

ENSMUST00000199369

Name

Aldh2-206

Strand

Biotype

protein_coding

Start-end positions

121567879-121579666

CDS Start-stop positions

121567991-

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:11669

Aliases

Ahd-5,
AHD-M1, Ahd5, ALDH-E2,
Aldh2, ALDHI, ENSMUSG00000029455,
MGI:99600, NCBI:11669, OFF:Aldh2

Chr 5

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
523906	54	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
517060	120	ATG ...	MIL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Neutrophil, Spleen_B_cell, v6-5
186288	36	GTG ...	VDR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
974092	96	ATG ...	MCL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	Liver, v6-5
905637	192	ATG ...	MGW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Liver, v6-5
974155	186	ATG ...	MET ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver
986107	219	TTG ...	LWG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Liver, Neutrophil, v6-5
521058	39	ATG ...	MSS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	MEF
986210	123	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Liver, v6-5
974164	147	ATT ...	ITC ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	Liver
1087570	90	TTG ...	LGP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	v6-5
524717	198	GTG ...	VEL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
524399	213	CTG ...	LLF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	MEF, Neutrophil, Spleen_B_cell, v6-5
906356	117	CTG ...	LCG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Liver, v6-5
67001	201	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Neutrophil
830662	108	ATG ...	MGW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Neutrophil, v6-5
986101	204	ATG ...	MIL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Liver, Neutrophil, v6-5
524690	48	CTG ...	LWA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	MEF, Spleen_B_cell
519153	135	TTG ...	LWG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Neutrophil, Spleen_B_cell, v6-5
524164	210	TTG ...	LFC ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	MEF, Neutrophil, Spleen_B_cell, v6-5
67206	168	GTG ...	VQA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	Neutrophil, Spleen_B_cell
873093	129	ATG ...	MSA ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	E14, MEF, v6-5

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