Transcript 34879 | MetamORF

Transcript

ID CARD

MetamORF ID

34879

ENSMUST00000168071

Name

Alcam-206

Strand

Biotype

protein_coding

Start-end positions

52305264-52452654

CDS Start-stop positions

52305551-52452465

CDS Relative positions

Sequences

Transcript sequence

CGT ...

Genome browsers

UCSC

Gene

NCBI:11658

Aliases

AI853494,
Alcam, BEN, CD166,
DM-GRASP, ENSMUSG00000022636, MGI:1313266,
MuSC, NCBI:11658, OFF:Alcam,
SC1

Chr 16

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
377000	96	ATG ...	MVH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
369243	33	GTG ...	VHA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
367703	42	ATG ...	MYL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, MEF
377157	183	CTG ...	LST ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
371807	84	GTG ...	VDF ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF
376468	135	ATG ...	MYL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, MEF
377428	168	ATG ...	MET ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
377296	156	TTG ...	LSC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
698688	51	TTG ...	LPS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
368308	75	ATG ...	MET ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, MEF
694888	33	ATG ...	MMM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
371115	174	GTG ...	VSW ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
951492	42	ATG ...	MLR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
371778	102	TTG ...	LDG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, MEF
371051	30	ATG ...	MMS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
34878	33	GTG ...	VCL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	BMDC, Testis
373262	30	GTG ...	VMR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
368612	90	CTG ...	LST ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
369314	237	GTG ...	VEE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
950978	30	AGG ...	RTM ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
952294	30	ATC ...	IFY ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
371375	69	TTG ...	LHS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
952875	45	ACG ...	TTP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
368477	63	TTG ...	LSC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
372508	42	GTG ...	VCS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
378265	195	TTG ...	LDG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver

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