Transcript 10044 | MetamORF

Transcript

ID CARD

MetamORF ID

10044

ENSMUST00000021425

Name

Ahsa1-201

Strand

Biotype

protein_coding

Start-end positions

87266698-87273979

CDS Start-stop positions

87266842-87273763

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:217737

Aliases

Ahsa1,
BC023857, ENSMUSG00000021037, MGI:2387603,
NCBI:217737, OFF:Ahsa1, p38

Chr 12

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1608143	39	CTG ...	LMK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
1298594	36	AGG ...	RSS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1847231	51	TTG ...	LVS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1300629	120	AGG ...	RPL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
10060	78	CTG ...	LDR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Skin_tumor, v6-5
780260	39	GTG ...	VAA ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Liver, MEF, Neutrophil
322602	36	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
667963	78	GTG ...	VAS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14
1039778	30	CTG ...	LWL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil
1607704	36	ATG ...	MKI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
460935	60	ATG ...	MWK ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
846119	48	GTG ...	VSK ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, R1E
328836	108	GTG ...	VRE ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
778668	105	GTG ...	VRE ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, R1E
1299373	69	ATG ...	MGR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, NSC
664861	81	CTG ...	LLL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
324084	54	TTG ...	LVH ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
324060	30	GTG ...	VDH ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
1298982	48	AAG ...	KQW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1605241	30	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
663632	87	ATG ...	MPP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, v6-5
1607379	36	GTG ...	VDH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1297077	63	AGG ...	RPN ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
324515	57	GTG ...	VAS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, NSC, R1E
1132476	72	TTG ...	LMG ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
665808	78	CTG ...	LPW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14
1346391	57	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1300400	66	AAG ...	KDM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1300580	159	AGG ...	RSS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
667199	108	ATG ...	MPP ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC
459066	63	CTG ...	LGP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Spleen_B_cell
10043	84	CTG ...	LAL ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, Skin_tumor, Spleen_B_cell, v6-5
331142	126	CTG ...	LDR ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
846161	54	CTG ...	LLV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, R1E
324769	39	TTG ...	LPK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1299866	81	AGA ...	RVY ...	Ribo-seq	AGA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1299043	63	AGG ...	RHP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1300088	81	AGG ...	RSG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1297020	99	AGG ...	RPL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
940889	129	ACG ...	TLD ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
666059	99	CTG ...	LPW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14

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